PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020698083.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

NAC

Protein Properties

Length: 661aa MW: 75617.9 Da PI: 6.4142

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020698083.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	182.4	1.1e-56	6	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lppGfrFhPtdeelv +yLk+k++g+++el evi+evd+yk+ePw+Lp k + +++ ewyfFs+rd+ky++g+r+nrat++gyWkatgkd++v XP_020698083.1 6 LPPGFRFHPTDEELVAYYLKRKINGRTIEL-EVIPEVDLYKCEPWELPeKsFLPSKDLEWYFFSPRDRKYPNGSRTNRATQAGYWKATGKDRKVN 99 79**************************.99**********95334455777*********************************** PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 s ++++vg+kktLv+y+grap+g++tdWvmheyrl XP_020698083.1 100 S-QKRAVGMKKTLVYYRGRAPHGSRTDWVMHEYRL 133 .9999**************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 661 aa Download sequence
MAPVTLPPGF RFHPTDEELV AYYLKRKING RTIELEVIPE VDLYKCEPWE LPEKSFLPSK 60 DLEWYFFSPR DRKYPNGSRT NRATQAGYWK ATGKDRKVNS QKRAVGMKKT LVYYRGRAPH 120 GSRTDWVMHE YRLDERECEI ANGLQDAYAL CRVFKKSEPG PKIIEHYGAP CEEHKQWMLN 180 EHSSTMTDLS PDGIGDYLES SNYHFQPSDC PQTMIQSSFE ASNSWMQFLT DEALSSTTAT 240 FQNTSFSYVP SKVDVALECA RLQQRFTMPS LEVEDYSLLH MADPTILHST NYSQNTTHGE 300 DILHELLSVA SASQELINNP NFHEDMWAAR ITPHFNESFS TLIESGDAVG SSKFIAKSCG 360 LEEQSTFVDI SELEDEFKEQ TKGKNLRDVK KLQENLLEMN KEVQKKDCSS NPHTEHICDA 420 RAETNQGNFT YESTEIDDKP IYSQSQEDNF SIGFINIQKD FNQDEHHHLD NAGSPSFDVY 480 HEMIQFNQGL LMSSQTVSKT FFHHIAPANK INIHLNPINF MVDKYESSER ARSSVSFFEN 540 FKNFFCNKLK KGSIFGRGGA NGMLGLIEVL LASSFYHGGL LEQSNLSRED MPSRVAAIQA 600 GGIKLTSYDG RKKAENMKRM KWNDGKKFWF PKIRGKSISR MLLNGNLLPW VSMLQPSHHS 660 Q

Sequence ? help Back to Top

Protein Sequence Length: 661 aa Download sequence

MAPVTLPPGF RFHPTDEELV AYYLKRKING RTIELEVIPE VDLYKCEPWE LPEKSFLPSK  60
DLEWYFFSPR DRKYPNGSRT NRATQAGYWK ATGKDRKVNS QKRAVGMKKT LVYYRGRAPH  120
GSRTDWVMHE YRLDERECEI ANGLQDAYAL CRVFKKSEPG PKIIEHYGAP CEEHKQWMLN  180
EHSSTMTDLS PDGIGDYLES SNYHFQPSDC PQTMIQSSFE ASNSWMQFLT DEALSSTTAT  240
FQNTSFSYVP SKVDVALECA RLQQRFTMPS LEVEDYSLLH MADPTILHST NYSQNTTHGE  300
DILHELLSVA SASQELINNP NFHEDMWAAR ITPHFNESFS TLIESGDAVG SSKFIAKSCG  360
LEEQSTFVDI SELEDEFKEQ TKGKNLRDVK KLQENLLEMN KEVQKKDCSS NPHTEHICDA  420
RAETNQGNFT YESTEIDDKP IYSQSQEDNF SIGFINIQKD FNQDEHHHLD NAGSPSFDVY  480
HEMIQFNQGL LMSSQTVSKT FFHHIAPANK INIHLNPINF MVDKYESSER ARSSVSFFEN  540
FKNFFCNKLK KGSIFGRGGA NGMLGLIEVL LASSFYHGGL LEQSNLSRED MPSRVAAIQA  600
GGIKLTSYDG RKKAENMKRM KWNDGKKFWF PKIRGKSISR MLLNGNLLPW VSMLQPSHHS  660
Q

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65910.1	1e-127	NAC family protein