PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020698091.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

ARF

Protein Properties

Length: 614aa MW: 69899.7 Da PI: 7.7707

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020698091.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	71.7	9.4e-23	111	211	1	98
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 f+k+lt sd++++g +++ +++a+++ +++++ +++l+ +d++g +W++k+iyr++++r++lt+GW+ Fv+ ++L +gD +vF + +++ XP_020698091.1 111 FCKILTASDTSTHGGFSVLRRHANDCipqldMSQPTPTQELSAKDLHGLEWRFKHIYRGQPRRHLLTTGWSTFVSCKRLVAGDAFVFL--RGENG 203 99*******************999977777888***********************************************..44999 PP ..EEEEE- CS B3 91 elvvkvfr 98 el+v+v r XP_020698091.1 204 ELRVGVKR 211 99999866 PP
2	Auxin_resp	95.6	7.4e-32	237	316	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha++t++ F+v+Y+Pr+ s+F++ ++k+ +++k+++s+Gm+fkm+fe++d++e+r++Gt+v++ dl++ +W++SkW++Lk XP_020698091.1 237 ASHAVKTHTRFTVCYKPRT--SQFIIGANKYFESVKNELSIGMKFKMRFEGDDVPEKRYTGTIVSLGDLSS-QWEGSKWKQLK 316 789*************6..9******************************************777.******996 PP

Sequence ? help Back to Top
Protein Sequence Length: 614 aa Download sequence
MGGDDLYEEL WRACAGPLVE IPRVEDRVYY FPQGHMEQLE ASTNQELDHR IPLFSLPYKI 60 LCRVLHIELR AEVETDEVYA QITLLPEAEQ TELKTPDPCV PEPKRPMINS FCKILTASDT 120 STHGGFSVLR RHANDCIPQL DMSQPTPTQE LSAKDLHGLE WRFKHIYRGQ PRRHLLTTGW 180 STFVSCKRLV AGDAFVFLRG ENGELRVGVK RLAQQKSTIP SSVISSHSMH IGVLATASHA 240 VKTHTRFTVC YKPRTSQFII GANKYFESVK NELSIGMKFK MRFEGDDVPE KRYTGTIVSL 300 GDLSSQWEGS KWKQLKVHWD EQMNFQRPDR VSPWEIEPCS SSTPTVATNK RPRFLMDQSD 360 SLPLETSASF RHSGAMHSQS YERKFQHNGV LNGFLKQNSA LMNSKPLSSA SSASLKSFLE 420 INQVKKAATP KRQCILGYVV EDQKLNHCKD KDECKKPEIG APYRLFGIDL SKPSGFSSLS 480 EKNPSSETTE EPLYQHSEQK ISTKLHKTEL VSPKEIQSKH SGSTRSRIKV HMHGVAVGRA 540 VDLMNLRGYD ELISELEKMF EIKGELSPRD KWEVVFTDDE GDIMLVGDDP WLEFCDMVRK 600 MYIYPSEEVK KLKQ

Sequence ? help Back to Top

Protein Sequence Length: 614 aa Download sequence

MGGDDLYEEL WRACAGPLVE IPRVEDRVYY FPQGHMEQLE ASTNQELDHR IPLFSLPYKI  60
LCRVLHIELR AEVETDEVYA QITLLPEAEQ TELKTPDPCV PEPKRPMINS FCKILTASDT  120
STHGGFSVLR RHANDCIPQL DMSQPTPTQE LSAKDLHGLE WRFKHIYRGQ PRRHLLTTGW  180
STFVSCKRLV AGDAFVFLRG ENGELRVGVK RLAQQKSTIP SSVISSHSMH IGVLATASHA  240
VKTHTRFTVC YKPRTSQFII GANKYFESVK NELSIGMKFK MRFEGDDVPE KRYTGTIVSL  300
GDLSSQWEGS KWKQLKVHWD EQMNFQRPDR VSPWEIEPCS SSTPTVATNK RPRFLMDQSD  360
SLPLETSASF RHSGAMHSQS YERKFQHNGV LNGFLKQNSA LMNSKPLSSA SSASLKSFLE  420
INQVKKAATP KRQCILGYVV EDQKLNHCKD KDECKKPEIG APYRLFGIDL SKPSGFSSLS  480
EKNPSSETTE EPLYQHSEQK ISTKLHKTEL VSPKEIQSKH SGSTRSRIKV HMHGVAVGRA  540
VDLMNLRGYD ELISELEKMF EIKGELSPRD KWEVVFTDDE GDIMLVGDDP WLEFCDMVRK  600
MYIYPSEEVK KLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G23980.1	0.0	ARF family protein