PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020698110.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family MYB
Protein Properties Length: 292aa    MW: 33141 Da    PI: 6.1609
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020698110.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding62.21.1e-191461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++l+d+++++G gtW+t ++  g+ R++k+c++rw +yl
   XP_020698110.1 14 KGPWTPEEDQKLIDYIQKHGHGTWRTLPKNAGLARCGKSCRLRWTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding53.55.4e-1767111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rgr++ eE+e +++++  lG++ W+ Ia++++ gRt++++k++w+++
   XP_020698110.1  67 RGRFSFEEEEAIIQLHSVLGNK-WSEIAARLP-GRTDNEIKNYWNTH 111
                      89********************.*********.************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    
MGRVPCCDKN GLKKGPWTPE EDQKLIDYIQ KHGHGTWRTL PKNAGLARCG KSCRLRWTNY  60
LRPDIKRGRF SFEEEEAIIQ LHSVLGNKWS EIAARLPGRT DNEIKNYWNT HIRKRLLRSG  120
IDPVTHRPRI DLLNLSSILN TVLFNQPAQM NTHEFLRIAV NLLQSQQLTS SLVYNPVQFN  180
YASQWQQNEA SSCNLGESLA TPDSNVCYTN NNEQPISNLL YEGSTSELLS DNNVYSDHDS  240
VLSTPVSSLS LTNNSSTIIN SSAEDEKDTY CSTYFDFQIS DLLDMIVSSY EG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21440.12e-93MYB family protein