PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020698233.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

MYB_related

Protein Properties

Length: 728aa MW: 81275 Da PI: 7.9901

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020698233.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24.1	8.2e-08	52	94	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT +E+e + a +q G++ +++I +++ + +q++++++ + XP_020698233.1 52 AWTRQEQENFFSALRQVGKN-FEKITCRVQ-SKNKNQVRHYYYRL 94 6***************99.*****.*********976 PP

Sequence ? help Back to Top
Protein Sequence Length: 728 aa Download sequence
MMHPQPQMAL EIHLPSTESS LLNDGDYKFP SSTSVAISTQ KPGQKRTRQW AAWTRQEQEN 60 FFSALRQVGK NFEKITCRVQ SKNKNQVRHY YYRLVRRMNK LLSPGFCLDA KNSKDTNAAM 120 LRWWSLLEKY SCTPSKLHRK PRRFKIFIEA LESQLLKDRN KARRKRPCQG ENCLETSSAS 180 WRFSDHDFVG VKTAVADAQN TSKLGINRGP SLKRNTNSNV NFSKGGFSAT KATGQRHRTG 240 LVESAAYKRW EKAAMAGVSL VADAAEQLER VTNRVCSHRI GETVLQTREK LKLQLFPIDE 300 DTRQILEKGA HNPFLELTLS ARKRISSVLE HLNRKWGTNT IDTRELFLLP YNIQQDDIAK 360 CQRWTIKDAD STAADVHAAI GNPSVFRLRY GWFSGVEPTA IFSISPLAPG PDDCTRLEDI 420 SKRFVTSDTS KTSPPISCTS KLRGSCKGSP LPSATSVAEI RGQTDTLKLK DGCPESSGKS 480 SSFTVEKAEE GSRNQQEDMA YPAVRCSSDL LAGEWADSLT NISIGDLLLE ASEVSSQQNA 540 LCIQQTSFSC DSFDAAVAAH SYFPQFTGLS TQAPVVSIWN AEETCDEFSF KKAQPLREKG 600 LNLSATISQA VSRDTTNMNV KESGRPNANT GDEPESENHS SFCYKQEPAE DVSLTDFYWP 660 DSLGSLGQLD FDLPFSRYPA QDLSFSERST GQSSFNRLIP SCLDAFQSGS LLGTDKKDFD 720 DDKMDIED

Sequence ? help Back to Top

Protein Sequence Length: 728 aa Download sequence

MMHPQPQMAL EIHLPSTESS LLNDGDYKFP SSTSVAISTQ KPGQKRTRQW AAWTRQEQEN  60
FFSALRQVGK NFEKITCRVQ SKNKNQVRHY YYRLVRRMNK LLSPGFCLDA KNSKDTNAAM  120
LRWWSLLEKY SCTPSKLHRK PRRFKIFIEA LESQLLKDRN KARRKRPCQG ENCLETSSAS  180
WRFSDHDFVG VKTAVADAQN TSKLGINRGP SLKRNTNSNV NFSKGGFSAT KATGQRHRTG  240
LVESAAYKRW EKAAMAGVSL VADAAEQLER VTNRVCSHRI GETVLQTREK LKLQLFPIDE  300
DTRQILEKGA HNPFLELTLS ARKRISSVLE HLNRKWGTNT IDTRELFLLP YNIQQDDIAK  360
CQRWTIKDAD STAADVHAAI GNPSVFRLRY GWFSGVEPTA IFSISPLAPG PDDCTRLEDI  420
SKRFVTSDTS KTSPPISCTS KLRGSCKGSP LPSATSVAEI RGQTDTLKLK DGCPESSGKS  480
SSFTVEKAEE GSRNQQEDMA YPAVRCSSDL LAGEWADSLT NISIGDLLLE ASEVSSQQNA  540
LCIQQTSFSC DSFDAAVAAH SYFPQFTGLS TQAPVVSIWN AEETCDEFSF KKAQPLREKG  600
LNLSATISQA VSRDTTNMNV KESGRPNANT GDEPESENHS SFCYKQEPAE DVSLTDFYWP  660
DSLGSLGQLD FDLPFSRYPA QDLSFSERST GQSSFNRLIP SCLDAFQSGS LLGTDKKDFD  720
DDKMDIED

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36960.3	1e-163	MYB_related family protein