PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020698439.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family bHLH
Protein Properties Length: 356aa    MW: 39904.4 Da    PI: 5.0354
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020698439.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.29.7e-112803201055
                     HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     r+RR+riN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  XP_020698439.1 280 RKRRERINERLKILQNLIPNG-----TKVDISTMLEEAVQYVKFLQ 320
                     9******************97.....8******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    
MDPEGVASKS RWSSFNSTMA TEASELLAQF LGIPTFSNEL EHDPSMFLQS LLWSDHGIDP  60
YYGSQDVNTN MCYWPMENSC NFSSLSNSNK QISEYESYYN NMEPNMMPTI GIRSEPTLLC  120
MEEDNINTTS YKTDQRNHFD DKNFMNDGEG IGTTKKSQGM RKIQVCDRVI DSINIQTSDK  180
KRIRASWQEG KSTGKSSKSK KADVNVEVGE EEVDNASAHI VQSSSCYSSK DEANTSQELN  240
GGDGTSTSTS LNGSMVSLNS NGKKRAGRGS ATDPQSLYAR KRRERINERL KILQNLIPNG  300
TKVDISTMLE EAVQYVKFLQ VQIKLFSSDE LWMYAPISYN GIKIDLDLKM SPFKIG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1263283KKRAGRGSATDPQSLYARKRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.12e-52bHLH family protein