PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020698594.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

MYB

Protein Properties

Length: 227aa MW: 26163.6 Da PI: 5.9778

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020698594.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.8	1.1e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +l+ +++ +G g+W++ ++ g+ R++k+c++rw +yl XP_020698594.1 14 KGPWTPEEDHILISYIRTHGHGNWRALPKQAGLLRCGKSCRLRWTNYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	51.3	2.7e-16	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg +++eE++ ++ +++lG++ W++Ia++++ gRt++++k++w+++l XP_020698594.1 67 RGDFSKEEEDTIIYMHTMLGNR-WSAIAAKLP-GRTDNEIKNFWHTHL 112 899*****************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 227 aa Download sequence
MVRAPCCEAM GLKKGPWTPE EDHILISYIR THGHGNWRAL PKQAGLLRCG KSCRLRWTNY 60 LRPDVKRGDF SKEEEDTIIY MHTMLGNRWS AIAAKLPGRT DNEIKNFWHT HLKKRLNPNQ 120 VAKKSKPKVQ KKNKVEEQIS PGFVQNEPSF FEINTENDNV DVMQKCIDDY FKEYLPEIDE 180 LLWSEAFAVT GEEEESSIGE SFSQPSLSND DAISFWMNLL AESGNLE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23250.1	2e-73	MYB family protein