PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020698687.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family C2H2
Protein Properties Length: 365aa    MW: 41349.4 Da    PI: 7.3263
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020698687.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.50.0001288310123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     + C +Cgk F  + + ++H +++
  XP_020698687.1 288 FMCRKCGKAFAVRGDWRTHEKNC 310
                     89*****************9987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    
MADPYSNFFK RHFSYYPFST SNPPLPPPHP PPPQPTPASL PPYNFYTNYN YNYSYYFQNT  60
NNNLLQSPPP SPPLREALPL LKLSPQKHQL EDGDETSFTI FDGEAEADSK KKKKITLDDD  120
EEDDETEGAV TVALHIGLPS PTAADLISRI SSATVDEDHN LDQDDEDGSS NINIPLGCPT  180
IGKLTKGQYW IPTPSQILIG PTQFSCPVCC KTFNRYNNMQ MHMWGHGSQY RKGPESLRGT  240
QPTAMLRLPC YCCAAGCRNN IDHPRAKPLK DFRTLQTHYK RKHGIKPFMC RKCGKAFAVR  300
GDWRTHEKNC GKLWYCTCGS DFKHKRSLKD HIKAFGHGHA AYGIDCFEEE DDPASEIEQD  360
VRGRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-129C2H2 family protein