PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020698720.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

HB-other

Protein Properties

Length: 1068aa MW: 118562 Da PI: 9.4416

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020698720.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	19.8	1.3e-06	74	130	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +++R ++++ ++ +++ F+ + ++ ++e +e+++ +g+t +qV+ +F +R k +k XP_020698720.1 74 KKPRDLLNPKAVKYMQSIFAIKDTIGKKETREISALCGVTVTQVRDFFSGQRSKVRK 130 799***************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 1068 aa Download sequence
MALVPVRTES SFLESEMDGS VESLGRLLDA QKKIFHSQID QLKRLVVNQC KLTGVNPLSQ 60 EMAAGALSIK IAGKKPRDLL NPKAVKYMQS IFAIKDTIGK KETREISALC GVTVTQVRDF 120 FSGQRSKVRK LVSLVREKAA KSDAANERCS TNPEETLLYH IDAPSSAVDV KNVGDLAEVP 180 DSNGNLLAIQ YYQNVPVSSI DSKPIQVVVP SSSSQEESIP GIYEDDKKFL ENIFNLMRKE 240 GTFAGQVKLM EWILQIHNSA VLVWFLTKGS ITILATWLSQ AAIEEQTTLL NVILKVLCHL 300 PLHKALPAQM SSILQTVNKL RFYRTPDISN RAKVLLSRWS KMLVRNQAVK YPSILNSSNG 360 VQKDIIRKQR ISEILSEEFW RSKIGITDEI LALKESSGND SKSDPKQALK LLTASCNRSN 420 RKQGQSALSI KIKERRKVRL VEQIDQKAAG RIAQVVKASP SNLSRPISAD DIQKAKMRAM 480 FMQHKYGKAD ASSSEIKIIV EDSKGLPAPQ SKKILPPPRI MQLEQINREE KMLADVLRGD 540 SEAPIDTISA GALQEESLEK LKRSQFQWQT PPEMKINSSW RVGEAESSKE VDVQAQRIRR 600 EKETFYSSKF DIPPDPKEPW DIEMDFDDSL TPEIPIDQPP DSDAVEDPLD PSGDDQTIPD 660 DMPAAMVALP PMTAYGNAAE PDFELLAVLL KNPELVFALT SGQGKNLSSD ERVALLDMIK 720 HSSVSPGASL TGISSSTSQD KPKDPVPMSL PSPTPPSDVE RAAGWRSAFP TVSKAQLPQS 780 QFSCAVRHSA PTLTPTPLPT LMVLPAQAEL QSAIVRTSHV LITANTVPQT VAFTSLTSQR 840 PCPLLSQHIL PSSYAEPQRL NTECSLPSKR NALSCPASAV PSPTPASFHQ DTYCRNSLPT 900 STVSSLPSLP PPQRRSQSLM ISDPSVAMIP PNPTSLSRGD ASAEWSEWRD MMPESSTRRQ 960 NAKEFTLQGS PRFNASIRDI YHTHQGRSTG RVEIVGRSRD LETWSPERPP LRSSESRHGH 1020 GRSHAESRRE QGWNQRHELS RQRSSEHHDQ NRSSNGSRGR WRDRDRRR

Sequence ? help Back to Top

Protein Sequence Length: 1068 aa Download sequence

MALVPVRTES SFLESEMDGS VESLGRLLDA QKKIFHSQID QLKRLVVNQC KLTGVNPLSQ  60
EMAAGALSIK IAGKKPRDLL NPKAVKYMQS IFAIKDTIGK KETREISALC GVTVTQVRDF  120
FSGQRSKVRK LVSLVREKAA KSDAANERCS TNPEETLLYH IDAPSSAVDV KNVGDLAEVP  180
DSNGNLLAIQ YYQNVPVSSI DSKPIQVVVP SSSSQEESIP GIYEDDKKFL ENIFNLMRKE  240
GTFAGQVKLM EWILQIHNSA VLVWFLTKGS ITILATWLSQ AAIEEQTTLL NVILKVLCHL  300
PLHKALPAQM SSILQTVNKL RFYRTPDISN RAKVLLSRWS KMLVRNQAVK YPSILNSSNG  360
VQKDIIRKQR ISEILSEEFW RSKIGITDEI LALKESSGND SKSDPKQALK LLTASCNRSN  420
RKQGQSALSI KIKERRKVRL VEQIDQKAAG RIAQVVKASP SNLSRPISAD DIQKAKMRAM  480
FMQHKYGKAD ASSSEIKIIV EDSKGLPAPQ SKKILPPPRI MQLEQINREE KMLADVLRGD  540
SEAPIDTISA GALQEESLEK LKRSQFQWQT PPEMKINSSW RVGEAESSKE VDVQAQRIRR  600
EKETFYSSKF DIPPDPKEPW DIEMDFDDSL TPEIPIDQPP DSDAVEDPLD PSGDDQTIPD  660
DMPAAMVALP PMTAYGNAAE PDFELLAVLL KNPELVFALT SGQGKNLSSD ERVALLDMIK  720
HSSVSPGASL TGISSSTSQD KPKDPVPMSL PSPTPPSDVE RAAGWRSAFP TVSKAQLPQS  780
QFSCAVRHSA PTLTPTPLPT LMVLPAQAEL QSAIVRTSHV LITANTVPQT VAFTSLTSQR  840
PCPLLSQHIL PSSYAEPQRL NTECSLPSKR NALSCPASAV PSPTPASFHQ DTYCRNSLPT  900
STVSSLPSLP PPQRRSQSLM ISDPSVAMIP PNPTSLSRGD ASAEWSEWRD MMPESSTRRQ  960
NAKEFTLQGS PRFNASIRDI YHTHQGRSTG RVEIVGRSRD LETWSPERPP LRSSESRHGH  1020
GRSHAESRRE QGWNQRHELS RQRSSEHHDQ NRSSNGSRGR WRDRDRRR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	1058	1068	RGRWRDRDRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02560.2	1e-134	HB-other family protein