PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020698724.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

C3H

Protein Properties

Length: 468aa MW: 50355.7 Da PI: 8.4943

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020698724.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	32.9	1.1e-10	48	73	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C++f+rtG+C y +rC+++H++ XP_020698724.1 48 GEPDCDYFMRTGICGYAERCRYNHPR 73 5799********************96 PP
2	zf-CCCH	33.5	7.2e-11	96	120	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C+++ +tGtCk+G++Ck++H++ XP_020698724.1 96 QPACQYYIKTGTCKFGSSCKYHHPR 120 689********************96 PP
3	zf-CCCH	39.4	9.9e-13	141	166	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tG Ck+G++CkF+H++ XP_020698724.1 141 GEKECSYYMKTGLCKFGSTCKFHHPQ 166 7899********************97 PP
4	zf-CCCH	40.4	4.8e-13	298	324	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+f++rtG Ck+G++Ck++H+p XP_020698724.1 298 PGQPECQFYMRTGDCKFGSSCKYNHPP 324 5789*********************96 PP
5	zf-CCCH	34.6	3.3e-11	347	370	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 lC+++a+ G Ck+G++CkF H++ XP_020698724.1 347 QLCSYYAQHGVCKFGPTCKFDHPM 370 69********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 468 aa Download sequence
MDPYGRSPTG DGRRPDPDTG LEESMWRLGL GGRSGSGGAD FSYPERLGEP DCDYFMRTGI 60 CGYAERCRYN HPRDRGVVGG EMFWPGAREY PERVGQPACQ YYIKTGTCKF GSSCKYHHPR 120 QGGGPVQPVS LNYYGYPLRP GEKECSYYMK TGLCKFGSTC KFHHPQPSAS TLPSSAPIFY 180 PTVQPPSVPS AQQYPQVGGW QIGRPSSALT GAYMQSSYGP MVLSPGVVPV PGWSPYLPPL 240 AQAVSPSAQQ SGQAGPSFGP ASQLSPSALA YPGPYSPMSS TIGPSSSSKK DHLFPERPGQ 300 PECQFYMRTG DCKFGSSCKY NHPPDWNTPK TNCILNPIGL PLRPGAQLCS YYAQHGVCKF 360 GPTCKFDHPM GTLSYSPSAS SLVDMPVAPY PIGMSPPTLA PSSSSTELRP EFHHGKDPFL 420 TQTPSDDVHT GSVGPLLAKG RFLPHALLKS SSQMPASTSN ISKMTSSS

Sequence ? help Back to Top

Protein Sequence Length: 468 aa Download sequence

MDPYGRSPTG DGRRPDPDTG LEESMWRLGL GGRSGSGGAD FSYPERLGEP DCDYFMRTGI  60
CGYAERCRYN HPRDRGVVGG EMFWPGAREY PERVGQPACQ YYIKTGTCKF GSSCKYHHPR  120
QGGGPVQPVS LNYYGYPLRP GEKECSYYMK TGLCKFGSTC KFHHPQPSAS TLPSSAPIFY  180
PTVQPPSVPS AQQYPQVGGW QIGRPSSALT GAYMQSSYGP MVLSPGVVPV PGWSPYLPPL  240
AQAVSPSAQQ SGQAGPSFGP ASQLSPSALA YPGPYSPMSS TIGPSSSSKK DHLFPERPGQ  300
PECQFYMRTG DCKFGSSCKY NHPPDWNTPK TNCILNPIGL PLRPGAQLCS YYAQHGVCKF  360
GPTCKFDHPM GTLSYSPSAS SLVDMPVAPY PIGMSPPTLA PSSSSTELRP EFHHGKDPFL  420
TQTPSDDVHT GSVGPLLAKG RFLPHALLKS SSQMPASTSN ISKMTSSS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.1	1e-132	C3H family protein