PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020698741.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family MYB
Protein Properties Length: 273aa    MW: 31048 Da    PI: 9.3922
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020698741.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.54.7e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+ Ed ll  +++ +G g+W++ +++ g+ R++k+c++rw +yl
   XP_020698741.1 14 RGPWTAREDALLTSYIQNHGEGNWRSLPKRAGLLRCGKSCRLRWMNYL 61
                     89******************************99************97 PP
2Myb_DNA-binding46.86.8e-1567112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+  +eE++l+++++ +lG++ W++Ia +++ gRt++++k++w+++l
   XP_020698741.1  67 RGNIGPEEEDLIIRLHCLLGNR-WSLIAGRLP-GRTDNEIKNYWNSHL 112
                      677889****************.*********.************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    
MGRAPCCSKV GLHRGPWTAR EDALLTSYIQ NHGEGNWRSL PKRAGLLRCG KSCRLRWMNY  60
LRPDIKRGNI GPEEEDLIIR LHCLLGNRWS LIAGRLPGRT DNEIKNYWNS HLSKKLKNQG  120
FVVREGTPRP KRSAAPNSDN KRKNNNNVNN NSKFAKIMQG NDAPESTKIY APKPTRFKPK  180
WLGMEKSESM TGDGEKGTSE ASSATDNADL VSWSQVDHVR EFDQTVGFLN ATHWDLASDF  240
SMQDESLERL YNEYSQLLQF EVDVNQLAEP LML
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47460.11e-64MYB family protein