PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020698774.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

DBB

Protein Properties

Length: 242aa MW: 26424.9 Da PI: 5.8383

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020698774.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	19.5	2.1e-06	5	46	6	41
zf-B_box 6 CpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 C+ ++ + C ++ lC++C +e H H++ p XP_020698774.1 5 CDVCKTAAAAVICCADEAALCAKCDVEVHAAnklagkHRRLP 46 ****99*******************6678888998877 PP
2	zf-B_box	30.5	7.4e-10	53	94	2	37
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 + ++C+ +++k + +fC +++ l+C+dC +++H H XP_020698774.1 53 KLPRCDICQDKAAFIFCVEDRALFCQDCDEAIHIAgtlsgnH 94 789******************************224555555 PP

Sequence ? help Back to Top
Protein Sequence Length: 242 aa Download sequence
MRIGCDVCKT AAAAVICCAD EAALCAKCDV EVHAANKLAG KHRRLPLSCD TSKLPRCDIC 60 QDKAAFIFCV EDRALFCQDC DEAIHIAGTL SGNHQRLLAT GIRVGLISAQ NMDSNKHHSE 120 PPNGHSMTQT CKKIPAKKQT PSASSIPSAW AVDDFLQLSD YESGYKKDSS VGFGELSWFT 180 DISFSHEGAS EGSLSQAEVP EMLFKQPSSE SFYRLPKPNM PYKNPRIGML EDEDFFTVPD 240 LG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06040.1	2e-67	DBB family protein