PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020698786.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family HD-ZIP
Protein Properties Length: 289aa    MW: 32741.9 Da    PI: 5.8731
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020698786.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.97e-1874127356
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     k+++++ eq+++Le+ Fe  +++  e++ +LA+ lgL+ rq+ +WFqNrRa++k
  XP_020698786.1  74 KKRRLNMEQVRTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWK 127
                     456899***********************************************9 PP
2HD-ZIP_I/II129.71.2e-4173163191
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                     ekkrrl+ eqv++LE++Fe  +kLeperK++lar+Lglqprq+a+WFqnrRAR+ktkqlEkdy+ Lkr++da+k++n+ L++++++L++e+
  XP_020698786.1  73 EKKRRLNMEQVRTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDLLKRQFDAIKADNDVLQNQNKKLQAEI 163
                     69**************************************************************************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    
MMSMHMASCN GLSSSSPFFP PNFILQMQST NSEHDHFPPP LNPQDFSSRG MPAMVEACEG  60
EEDLSDDCSQ PGEKKRRLNM EQVRTLEKNF ELGNKLEPER KMQLARALGL QPRQIAIWFQ  120
NRRARWKTKQ LEKDYDLLKR QFDAIKADND VLQNQNKKLQ AEILALKGRE APELINLNKE  180
TEGSCSNRSE NSSEINLDIS RTSTTATAAT VTAVVSESHL NHPIQNIPFF SVIRPPAITQ  240
LLPSSSRPDL QCTKIEHGTV VADENFSNLL CGMDEQNAFW PWPDNHNLH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1122130RRARWKTKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.14e-83HD-ZIP family protein