PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020698855.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

FAR1

Protein Properties

Length: 565aa MW: 64471.7 Da PI: 9.1489

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020698855.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	88.2	1.2e-27	56	145	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +fY eYA+++GF+vr+s+ +skr+++i++r++vC +eg+r+ ++ + +++++r+r+ tr+gC+a+++vkk+++gkw ++k+e+ HnH l XP_020698855.1 56 SFYYEYASQMGFKVRVSSFVRSKRDKTIISRQLVCFREGFRSAKDGNsQVRTKRPRMITRVGCRAMIMVKKQSSGKWIISKCENIHNHLL 145 5**************************************9998876889999********************************87 PP
2	FAR1	94.2	1.6e-29	215	302	2	89
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 fY+eYA+++GF+ r+s+ ++skr+++i++r vCskeg+r+++++++e++ r+ra tr+gCka+++vkk+ + +w+v+kl+++HnH l XP_020698855.1 215 FYKEYARRAGFRARISTYYRSKRDNSIISRLIVCSKEGFRSKKDDNAEERLRPRAITRVGCKAMIMVKKRGSRNWVVSKLVKQHNHLL 302 ********************************************9*************************************88 PP
3	FAR1	90.3	2.7e-28	352	441	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +fYn+Y+k++GF++r+s+ ++skr+++i++r fvCskeg++ ++++ + ++rr+++ tr+gCka+l vkk++ gkw+v+k+e+eHnH+l XP_020698855.1 352 QFYNAYSKRMGFNMRVSTYYRSKRDKSIISRLFVCSKEGFHLKKDTIsEGSSRRSKEATRVGCKAMLLVKKSNYGKWVVSKCENEHNHPL 441 6*************************************998887646789999*******************************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 565 aa Download sequence
MERFAFSNPM IISPGDMDEM IESSVPRNTF TSAGAAEPIV EPYEGMKFES EDAARSFYYE 60 YASQMGFKVR VSSFVRSKRD KTIISRQLVC FREGFRSAKD GNSQVRTKRP RMITRVGCRA 120 MIMVKKQSSG KWIISKCENI HNHLLGTLGK VVILDFDPYG RANEALESQT WRETNVHRDV 180 ASDPHELVVV PSEMDPHLEP HEGMEFESEQ AAQTFYKEYA RRAGFRARIS TYYRSKRDNS 240 IISRLIVCSK EGFRSKKDDN AEERLRPRAI TRVGCKAMIM VKKRGSRNWV VSKLVKQHNH 300 LLIARHVEDD DGSDVEGDET IESEEGLPSQ SGDVIAEPHG GMEFESEEGA RQFYNAYSKR 360 MGFNMRVSTY YRSKRDKSII SRLFVCSKEG FHLKKDTISE GSSRRSKEAT RVGCKAMLLV 420 KKSNYGKWVV SKCENEHNHP LGSLRKMHKL RKRKHLCGTS KKHEDQLENY QNSYESATSQ 480 YNILCHEASK YAESGVTSTD LYNVAIHTLQ QAVKKVSSIK SLEVSKSGTV IIGDDVDDTS 540 YQDSHVETSA SYDFESARRL NFSDR

Sequence ? help Back to Top

Protein Sequence Length: 565 aa Download sequence

MERFAFSNPM IISPGDMDEM IESSVPRNTF TSAGAAEPIV EPYEGMKFES EDAARSFYYE  60
YASQMGFKVR VSSFVRSKRD KTIISRQLVC FREGFRSAKD GNSQVRTKRP RMITRVGCRA  120
MIMVKKQSSG KWIISKCENI HNHLLGTLGK VVILDFDPYG RANEALESQT WRETNVHRDV  180
ASDPHELVVV PSEMDPHLEP HEGMEFESEQ AAQTFYKEYA RRAGFRARIS TYYRSKRDNS  240
IISRLIVCSK EGFRSKKDDN AEERLRPRAI TRVGCKAMIM VKKRGSRNWV VSKLVKQHNH  300
LLIARHVEDD DGSDVEGDET IESEEGLPSQ SGDVIAEPHG GMEFESEEGA RQFYNAYSKR  360
MGFNMRVSTY YRSKRDKSII SRLFVCSKEG FHLKKDTISE GSSRRSKEAT RVGCKAMLLV  420
KKSNYGKWVV SKCENEHNHP LGSLRKMHKL RKRKHLCGTS KKHEDQLENY QNSYESATSQ  480
YNILCHEASK YAESGVTSTD LYNVAIHTLQ QAVKKVSSIK SLEVSKSGTV IIGDDVDDTS  540
YQDSHVETSA SYDFESARRL NFSDR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18960.1	2e-40	FAR1 family protein