PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020698982.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

MYB

Protein Properties

Length: 213aa MW: 24546.7 Da PI: 10.5401

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020698982.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.6	2.1e-16	16	61	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l+++v+q+G+ +W++Ia+++ gR++k+c++rw++ XP_020698982.1 16 RGHWRPGEDVKLKELVAQYGPQNWNLIAEKLV-GRSGKSCRLRWFNQ 61 899***************************.*********996 PP
2	Myb_DNA-binding	57	4.4e-18	68	111	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r+++T+eE+e+l+ a+k +G++ W+ I+r ++ gRt++ +k++w+ XP_020698982.1 68 RKAFTEEEEERLLSAHKFHGNK-WAFISRLFP-GRTDNAVKNHWHV 111 789*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 213 aa Download sequence
METRELHNVN SKLCVRGHWR PGEDVKLKEL VAQYGPQNWN LIAEKLVGRS GKSCRLRWFN 60 QLDPRINRKA FTEEEEERLL SAHKFHGNKW AFISRLFPGR TDNAVKNHWH VIMARRQREI 120 SNAYKRRKSL TSSFKSSLKM EKNNNNNSNS SNECTSSRKF HLSLFFNCDK FPENSFLTGS 180 DGKSEASAAG TVVSHEREKM SLPFIDFLGV GAT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17800.1	3e-67	MYB family protein