PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020699063.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

NF-YC

Protein Properties

Length: 172aa MW: 19693.2 Da PI: 5.9261

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020699063.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	171.2	1.1e-53	46	149	1	101
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 ql+ fw++q ie++tdfknh+lPlarikki+kadedv+mi+aeaPv++++ace+filelt r w haeenkrrtl+k+diaaa+trtd+fdfl XP_020699063.1 46 QLQIFWADQyreIEQTTDFKNHNLPLARIKKIMKADEDVRMIAAEAPVVFARACEMFILELTHRGWAHAEENKRRTLQKNDIAAAITRTDVFDFL 140 89***99999******************************************************************************* PP NF-YC 93 vdivprdel 101 vdivpr+e XP_020699063.1 141 VDIVPREEG 149 ****975 PP

Sequence ? help Back to Top
Protein Sequence Length: 172 aa Download sequence
MDQQNHSTPQ AMGVAASVTY PAAAAAPYQA AYQHLYHQQQ QQQQQQLQIF WADQYREIEQ 60 TTDFKNHNLP LARIKKIMKA DEDVRMIAAE APVVFARACE MFILELTHRG WAHAEENKRR 120 TLQKNDIAAA ITRTDVFDFL VDIVPREEGR DEAVPRAIPG GPVDPLYYYV PQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	119	125	RRTLQKN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G56170.1	2e-63	NF-YC family protein