PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020699089.2

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

NF-YC

Protein Properties

Length: 198aa MW: 22280.3 Da PI: 10.5975

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020699089.2	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	62.1	1.1e-19	17	77	39	99
NF-YC 39 isaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 + e+Pv+ +ace+fi elt ++w ha++++r+t++k di aa ++t dflvd+ ++ XP_020699089.2 17 AAKETPVICERACEMFIQELTEKAWAHAQKSNRQTIEKRDIVAAAKETGHCDFLVDRKRKN 77 5679****************************************************98765 PP

Sequence ? help Back to Top
Protein Sequence Length: 198 aa Download sequence
MDRKGHKKPL PPQHAAAAKE TPVICERACE MFIQELTEKA WAHAQKSNRQ TIEKRDIVAA 60 AKETGHCDFL VDRKRKNHRG AHGASSSTAI PGDPLDPPEP RYHDESNMFK GVPPLSSREF 120 RPSHLVRHRV RRHRALSRAA HRPELVRRPE PTFRDPTSSG RAMPSISIAL SLQSRTPVIP 180 SSSAVDPGVH YRCFDFEP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G54830.3	4e-15	NF-YC family protein