PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020699092.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family NF-YC
Protein Properties Length: 127aa    MW: 15013 Da    PI: 5.7503
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020699092.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC1041e-3229127196
           NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 
                     ql++ w++    ie+++ fkn +l l+ ikki+ +dedv+mi  ea v+++ a e+filelt r+w hae+nk +tl+k+di aa+ +td  +fl
  XP_020699092.1  29 QLRTLWADMyreIEQMKIFKNMNLSLTTIKKIMETDEDVQMIDDEALVVFACAYEMFILELTHRAWTHAEKNKHQTLQKNDIVAAIRQTDRLEFL 123
                     7899998765569********************************************************************************** PP

           NF-YC  93 vdiv 96 
                      div
  XP_020699092.1 124 EDIV 127
                     **87 PP
Sequence ? help Back to Top
Protein Sequence    Length: 127 aa     Download sequence    
MDQQNHNTPQ ANGDITGAHL CHHHHQQQQL RTLWADMYRE IEQMKIFKNM NLSLTTIKKI  60
METDEDVQMI DDEALVVFAC AYEMFILELT HRAWTHAEKN KHQTLQKNDI VAAIRQTDRL  120
EFLEDIV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54830.38e-35NF-YC family protein