PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020699194.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

MIKC_MADS

Protein Properties

Length: 242aa MW: 27796.8 Da PI: 9.7423

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020699194.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	100.2	8e-32	9	58	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krienk+nrqvtfskRrng+lKKA+ELSvLCdaeva+iifss+gklye+ XP_020699194.1 9 KRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFG 58 79**********************************************95 PP
2	K-box	109.1	4.9e-36	77	171	5	99
K-box 5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 + +++ +++++s++qe++kLk++ e+Lqr++RhllGedL++L++keLqqLe+qLe +l++ R++K++++l+q+eel+kke++l e+nk+L++kle XP_020699194.1 77 QATNTIDRETQSWYQEVSKLKAKFESLQRSHRHLLGEDLGPLNVKELQQLERQLEAALSQARQRKTQIMLDQMEELRKKERQLGEINKQLKMKLE 171 556677899************************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 242 aa Download sequence
MGRGRVELKR IENKINRQVT FSKRRNGLLK KAYELSVLCD AEVALIIFSS RGKLYEFGSA 60 GTCKTLERYQ RSSFSSQATN TIDRETQSWY QEVSKLKAKF ESLQRSHRHL LGEDLGPLNV 120 KELQQLERQL EAALSQARQR KTQIMLDQME ELRKKERQLG EINKQLKMKL EAGSGSLRLI 180 QGSWESDAVV EGNAFQMNPY QSSGMECEPT LHIGYHQFVP PETVIPRTPG VENNNFMLGW 240 ML

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45650.1	9e-87	MIKC_MADS family protein