PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020699202.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

SBP

Protein Properties

Length: 393aa MW: 43050.1 Da PI: 9.5432

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020699202.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	126.7	9.2e-40	156	234	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEE.TTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlv.sgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cq+egC+adls ak+yhrrhkvC++hskapvv+ gl+qrfCqqCsrfh l efD++krsCr+rLa+hn+rrrk+qa XP_020699202.1 156 RCQAEGCRADLSGAKHYHRRHKVCDFHSKAPVVFFpGGLQQRFCQQCSRFHGLAEFDDTKRSCRKRLAEHNRRRRKPQA 234 6******************************963689***********************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 393 aa Download sequence
MMNTSHNTET YAASPFMSFV GIEGSGSTHA SQKQQLWDWD SSNTFSSTTH SLPFYTTHTI 60 PTLLDAPPPS LFTINNPLPF YFPPPPPPPP PPSANIIPDY PRASGFFKLE DGLTAGGYGG 120 LAGARIGLNL GHRTYFSSVD HQLMLFGRSA HHQPPRCQAE GCRADLSGAK HYHRRHKVCD 180 FHSKAPVVFF PGGLQQRFCQ QCSRFHGLAE FDDTKRSCRK RLAEHNRRRR KPQAQPPAKG 240 GSSSSVAPTI KAKEENKVTS GTKTSKQLSS IIKPNNTIPP ILSSSNISLE GQQKKALTPF 300 TSGSALSLGG IGGSTTHEQQ RVSTFMSAEE KASQYQQQFQ GHFASPCSSS NTFFPHQNFF 360 NEGTHSGGGS EMAHHNQSSI LQLGQAMFEW DFI

Sequence ? help Back to Top

Protein Sequence Length: 393 aa Download sequence

MMNTSHNTET YAASPFMSFV GIEGSGSTHA SQKQQLWDWD SSNTFSSTTH SLPFYTTHTI  60
PTLLDAPPPS LFTINNPLPF YFPPPPPPPP PPSANIIPDY PRASGFFKLE DGLTAGGYGG  120
LAGARIGLNL GHRTYFSSVD HQLMLFGRSA HHQPPRCQAE GCRADLSGAK HYHRRHKVCD  180
FHSKAPVVFF PGGLQQRFCQ QCSRFHGLAE FDDTKRSCRK RLAEHNRRRR KPQAQPPAKG  240
GSSSSVAPTI KAKEENKVTS GTKTSKQLSS IIKPNNTIPP ILSSSNISLE GQQKKALTPF  300
TSGSALSLGG IGGSTTHEQQ RVSTFMSAEE KASQYQQQFQ GHFASPCSSS NTFFPHQNFF  360
NEGTHSGGGS EMAHHNQSSI LQLGQAMFEW DFI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	215	232	KRSCRKRLAEHNRRRRKP
2	227	253	RRRRKPQAQPPAKGGSSSSVAPTIKAK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G02065.1	5e-37	SBP family protein