PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020699204.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family GATA
Protein Properties Length: 243aa    MW: 26441.7 Da    PI: 9.9146
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020699204.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.58.8e-19152186135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C++C + +Tp+WR gp+g+ktLCnaCG+++++ +l
  XP_020699204.1 152 CRHCESEETPQWRAGPEGPKTLCNACGVRFKSGRL 186
                     *******************************9885 PP
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    
MFKPTAAADF ADELFLLDFS DEKGSTNPNP SRRRAAHFFQ EILDADVDGL HGLAAQEGKN  60
EEEEEELEWL ANKDVFPALE TSFDLSAQSF SSSSAASGDR RSPVSVLASA LPFRAPAKLR  120
TKGQRRRRKT LPCFIPPPPA AHPAASAGKR KCRHCESEET PQWRAGPEGP KTLCNACGVR  180
FKSGRLVPEY RPANSPTFTA SVHSNSHRRI VEMRRQKYGA AASSAAGGHG RGRRSLIAGL  240
AVM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1125151RRRRKTLPCFIPPPPAAHPAASAGKRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24050.12e-38GATA family protein