PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020699226.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

bHLH

Protein Properties

Length: 266aa MW: 29589.6 Da PI: 7.2383

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020699226.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.1	6.4e-13	73	124	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h +Er+RR+ +N+ + Lr+l+P++ ++ + a+i A+++Ik+L+ XP_020699226.1 73 QRMTHIVVERNRRRLMNEHLCALRSLMPSS---FVQRGDQASIIGGAIDFIKELE 124 79*************************9...9****************996 PP

Sequence ? help Back to Top
Protein Sequence Length: 266 aa Download sequence
MERLHRHINS FFLEECMESK ELSGASSALE AVFHGGNREG KLSSFFPAVA ERKKRKRVAA 60 KNGRAERVEA ESQRMTHIVV ERNRRRLMNE HLCALRSLMP SSFVQRGDQA SIIGGAIDFI 120 KELEQMLLSF QAEKVSRSSP SPAEDGWSPA AATVSSFFVS PQYTGYCFGL RRADEEGESE 180 VDVEVTAVQG HVNLKVAGRR RPGQLVKAIA AIEELRLTVL HLSITSLDAV SVLYSLNLKM 240 EEDCRLGSAD EIASAVHQIF SYINTY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	52	57	RKKRKR
2	74	85	RMTHIVVERNRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G01460.1	6e-58	bHLH family protein