PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020699304.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

E2F/DP

Protein Properties

Length: 386aa MW: 42935.6 Da PI: 8.9049

Description

E2F/DP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020699304.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	E2F_TDP	74.2	1.4e-23	16	81	1	71
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 rk+ksL+ll+++f++l++k + ++v+l+++a +L v +rRRiYDi+NV+e+++++++k+kn++ w+g XP_020699304.1 16 RKQKSLGLLCSNFVSLYNKGDVDTVCLDDAAIKL---GV--ERRRIYDIVNVMESIGVLTRKAKNRYLWIG 81 79***************999********.....****************************98 PP
2	E2F_TDP	72.2	5.7e-23	148	232	1	71
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvse..........dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 rkeksL++ltq+f+kll ++++++v+l+++ak L+ + + k+RR+YDi+NVL++lnliek ++k+++rw g XP_020699304.1 148 RKEKSLGQLTQNFVKLLLTTNADMVSLDDAAKLLLGDgqnpaylrnaNA-AKVRRLYDIANVLSSLNLIEKthqsdTRKPAFRWLG 232 79*****************************************9644.79*****************9999*****87 PP

Sequence ? help Back to Top
Protein Sequence Length: 386 aa Download sequence
MAEKSESGSR HHAYSRKQKS LGLLCSNFVS LYNKGDVDTV CLDDAAIKLG VERRRIYDIV 60 NVMESIGVLT RKAKNRYLWI GFKGIPITLE QLKEGTAKEH NISSLESSSA KVSDDEDDDK 120 SLDHNDDYGE GRLCITDTAA KPKCVAERKE KSLGQLTQNF VKLLLTTNAD MVSLDDAAKL 180 LLGDGQNPAY LRNANAAKVR RLYDIANVLS SLNLIEKTHQ SDTRKPAFRW LGTKGKCENG 240 VTIALPPVAQ KSGKRMFGTE LTNVEVKRAK LLSSVDNKSN KTQVLSHDLK ECNKAVQRQL 300 QGSKSFVFGP FNPPKTPKEE VIEQKFENDP DFESFASSMR PAYHSQALHD LFSHYMEAYN 360 SWFAEIAGGS GNLQQPLKKS VHIGHS

Sequence ? help Back to Top

Protein Sequence Length: 386 aa Download sequence

MAEKSESGSR HHAYSRKQKS LGLLCSNFVS LYNKGDVDTV CLDDAAIKLG VERRRIYDIV  60
NVMESIGVLT RKAKNRYLWI GFKGIPITLE QLKEGTAKEH NISSLESSSA KVSDDEDDDK  120
SLDHNDDYGE GRLCITDTAA KPKCVAERKE KSLGQLTQNF VKLLLTTNAD MVSLDDAAKL  180
LLGDGQNPAY LRNANAAKVR RLYDIANVLS SLNLIEKTHQ SDTRKPAFRW LGTKGKCENG  240
VTIALPPVAQ KSGKRMFGTE LTNVEVKRAK LLSSVDNKSN KTQVLSHDLK ECNKAVQRQL  300
QGSKSFVFGP FNPPKTPKEE VIEQKFENDP DFESFASSMR PAYHSQALHD LFSHYMEAYN  360
SWFAEIAGGS GNLQQPLKKS VHIGHS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48160.2	9e-87	E2F/DP family protein