PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020699320.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

LBD

Protein Properties

Length: 247aa MW: 26931.2 Da PI: 6.833

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020699320.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	115.1	4.4e-36	51	153	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq..pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +C aCk+lrrkC+++Cv+a +f +eq p++f +vhk+FGasnv+kllk +p+ +r+da+ +++yeA+ar+ dPv G+v++il+l++q+ ql++e XP_020699320.1 51 PCGACKFLRRKCVSGCVFAAHFGSEQgaPARFSAVHKVFGASNVSKLLKLVPPAHRHDAVVTVCYEAQARICDPVLGCVATILALHHQVLQLQSE 145 7*******************9998767************************************************************** PP DUF260 94 lallkeel 101 l+ ++++l XP_020699320.1 146 LSIVQSQL 153 *99985 PP

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence
MDRLSFNPNE LCDRSRWIDY TMLPSANKQK AKPARARATA AGNSSSSVKA PCGACKFLRR 60 KCVSGCVFAA HFGSEQGAPA RFSAVHKVFG ASNVSKLLKL VPPAHRHDAV VTVCYEAQAR 120 ICDPVLGCVA TILALHHQVL QLQSELSIVQ SQLINSRLAA AEAFHHSQTQ QQLMTVQPAY 180 SNSSVSNNLN FSNFPSSGLD FCDSQSLELL QLSQTIDEDD GEEVEDSTDK HPEAFSDGIF 240 QPKEQSH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03760.1	8e-57	LBD family protein