PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020699321.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family M-type_MADS
Protein Properties Length: 241aa    MW: 26850.9 Da    PI: 8.3624
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020699321.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF702.1e-222873146
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46
                    krien+  rqv fskRr+g++KKA ELS+LC+ae+ +++fs+ gk 
  XP_020699321.1 28 KRIENEEARQVCFSKRRAGLFKKATELSILCGAEIGIVVFSPAGKP 73
                    79*****************************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    
MADGDNGLLM MMVRKKRQSM GRQKIAMKRI ENEEARQVCF SKRRAGLFKK ATELSILCGA  60
EIGIVVFSPA GKPFSFGHPS LDYITKRFLG GGGNNNDVEV VGPLCGMFVE GQKLLQLNQE  120
HAGLTEKLEE ARRMRAKLEA GVAAQRGRSG LSCDVEVHEM CVEDLESFQK RLEELRRGVT  180
NRREELEILC IDTKVARGGV PPQLGYGGWY LGGYNGLYLT PAPVGWFYGH DQDMNMGFSV  240
W
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.18e-31M-type_MADS family protein