PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020699322.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family M-type_MADS
Protein Properties Length: 134aa    MW: 15196 Da    PI: 10.3673
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020699322.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF49.45.9e-161664149
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    k+i+ +  r+  fskRrn +lKKA+ELS+L +ae+++i+f +tg+ + +
  XP_020699322.1 16 KPIKKDEARKLYFSKRRNRLLKKANELSTLYGAEICIIVFFPTGNAFSF 64
                    67999999***********************************987766 PP
Sequence ? help Back to Top
Protein Sequence    Length: 134 aa     Download sequence    
MMNKKQSITR QKIEIKPIKK DEARKLYFSK RRNRLLKKAN ELSTLYGAEI CIIVFFPTGN  60
AFSFVHLSVD VVAHRFLADA LALPLLCKPF IAAAAIKLNE DYAQLNVLLE KENIRHAKLD  120
EALTALQLGA NKPF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.11e-18M-type_MADS family protein