PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020699373.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

C3H

Protein Properties

Length: 442aa MW: 47939.9 Da PI: 8.1607

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020699373.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	31.1	4e-10	68	94	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C ++ rtG C++G +C+F+H+p XP_020699373.1 68 PGEADCAYYIRTGLCRFGITCRFNHPP 94 57899********************97 PP
2	zf-CCCH	30.5	6.1e-10	99	118	8	27
GGGGTS--TTTTT-SS-SSS CS zf-CCCH 8 ffartGtCkyGdrCkFaHgp 27 ++++tGtCk+G++CkF+H++ XP_020699373.1 99 YYLKTGTCKFGPTCKFHHPK 118 8*****************96 PP
3	zf-CCCH	33.5	7.1e-11	140	164	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C ++ rtG+Ck+G++CkF+H++ XP_020699373.1 140 EKECAYYIRTGQCKFGNTCKFHHPQ 164 679********************97 PP
4	zf-CCCH	38.2	2.3e-12	299	325	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+f+++tG Ck+G+ C+F+H++ XP_020699373.1 299 PGEPECQFYMKTGDCKFGAVCRFHHPR 325 5799*********************96 PP
5	zf-CCCH	40.1	5.9e-13	345	370	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++lC f++r+G+Ck+G++CkF H+ XP_020699373.1 345 PGEPLCIFYSRYGICKFGPNCKFDHP 370 589**********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 442 aa Download sequence
MEFDGGGRPM EFDGGGGVQL PPTRSANLAV TEASASSPLA TSLDEESMWQ MSLRVGDNIE 60 PGPFPERPGE ADCAYYIRTG LCRFGITCRF NHPPNRKLYY LKTGTCKFGP TCKFHHPKDK 120 AGITGRVQVN VLGYPLRPNE KECAYYIRTG QCKFGNTCKF HHPQPSNAML SLRGSPVYPS 180 VQSPTTPGQQ SLTGALTNWP LSKASFISPR WQGSSSYAQL ILPQGLVQVP SWSSFPGQYG 240 SASSPENQQQ NSGNAQFYGT SHQSETSTGS SASFSSFRFG SVPLGQYALQ RDGIFPERPG 300 EPECQFYMKT GDCKFGAVCR FHHPRERLIP APNCVLSPLG LPLRPGEPLC IFYSRYGICK 360 FGPNCKFDHP VAAPMGIFAY GLSTSSSPNV PVVRRLLGSS SALPALTFSS DGPLEAGPGK 420 SRRLSLSDSQ QIDSGDEDVE SE

Sequence ? help Back to Top

Protein Sequence Length: 442 aa Download sequence

MEFDGGGRPM EFDGGGGVQL PPTRSANLAV TEASASSPLA TSLDEESMWQ MSLRVGDNIE  60
PGPFPERPGE ADCAYYIRTG LCRFGITCRF NHPPNRKLYY LKTGTCKFGP TCKFHHPKDK  120
AGITGRVQVN VLGYPLRPNE KECAYYIRTG QCKFGNTCKF HHPQPSNAML SLRGSPVYPS  180
VQSPTTPGQQ SLTGALTNWP LSKASFISPR WQGSSSYAQL ILPQGLVQVP SWSSFPGQYG  240
SASSPENQQQ NSGNAQFYGT SHQSETSTGS SASFSSFRFG SVPLGQYALQ RDGIFPERPG  300
EPECQFYMKT GDCKFGAVCR FHHPRERLIP APNCVLSPLG LPLRPGEPLC IFYSRYGICK  360
FGPNCKFDHP VAAPMGIFAY GLSTSSSPNV PVVRRLLGSS SALPALTFSS DGPLEAGPGK  420
SRRLSLSDSQ QIDSGDEDVE SE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	1e-125	C3H family protein