PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020699691.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

AP2

Protein Properties

Length: 393aa MW: 43606 Da PI: 9.6746

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020699691.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	53.2	7.6e-17	64	123	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d ++n+ k+ k+++lg ++ +e Aa+a++ a++k++g XP_020699691.1 64 SIYRGVTRHRWTGRYEAHLWDkSTWNQnqnKKgKQVYLGAYDDEEAAARAYDLAALKYWG 123 57*****************766644468557***********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 393 aa Download sequence
MATASASSSE AIGAAKAEAS GGEWPTIDEP QPGVVLKKAR KERVCTAKER ISRMPPCAAG 60 KRSSIYRGVT RHRWTGRYEA HLWDKSTWNQ NQNKKGKQVY LGAYDDEEAA ARAYDLAALK 120 YWGAGTLINF PVSDYARDLE EMQMVSKEDY LVSLRRKSSA FSRGFTKFRG IQRQPQSTRW 180 EAPFGQMLGN EYYNCSTSRD PTTEGKYAGG FGMERKIDLT SHIRWWAPKK SRQPESVSSH 240 EDVSRELRAV ESSVQATEPY KLPLLGLPQK EKSQVRGTSA CSILSRSAAF KNFMEKASQI 300 QESTTSKEPD QGKSIPHFFA SSELDSSGIS MGFGELPIQR SQYSLSPLLT APLRTSWNPV 360 DPIPDPVFWT SLVPPTGQSL TTAVSSLPTN PAL

Sequence ? help Back to Top

Protein Sequence Length: 393 aa Download sequence

MATASASSSE AIGAAKAEAS GGEWPTIDEP QPGVVLKKAR KERVCTAKER ISRMPPCAAG  60
KRSSIYRGVT RHRWTGRYEA HLWDKSTWNQ NQNKKGKQVY LGAYDDEEAA ARAYDLAALK  120
YWGAGTLINF PVSDYARDLE EMQMVSKEDY LVSLRRKSSA FSRGFTKFRG IQRQPQSTRW  180
EAPFGQMLGN EYYNCSTSRD PTTEGKYAGG FGMERKIDLT SHIRWWAPKK SRQPESVSSH  240
EDVSRELRAV ESSVQATEPY KLPLLGLPQK EKSQVRGTSA CSILSRSAAF KNFMEKASQI  300
QESTTSKEPD QGKSIPHFFA SSELDSSGIS MGFGELPIQR SQYSLSPLLT APLRTSWNPV  360
DPIPDPVFWT SLVPPTGQSL TTAVSSLPTN PAL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41710.1	1e-118	AP2 family protein