PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020699910.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

WRKY

Protein Properties

Length: 391aa MW: 43615.8 Da PI: 7.569

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020699910.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	102.9	1.8e-32	103	159	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 dDgynWrKYGqK+vkg e+prsYY+Ct+++Cpvkkkvers d++v+ei+Y+g+Hnhe XP_020699910.1 103 DDGYNWRKYGQKQVKGCEYPRSYYKCTHPKCPVKKKVERSL-DGQVTEIIYRGQHNHE 159 8**************************************.*************8 PP
2	WRKY	106.7	1.2e-33	271	329	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vkg+++prsYY+Cts+gC+v+k+ver+++dpk+v++tYeg+Hnh+ XP_020699910.1 271 LDDGYRWRKYGQKLVKGNPHPRSYYKCTSTGCNVRKHVERASTDPKAVVTTYEGKHNHD 329 59********************************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 391 aa Download sequence
MRRHLHGGLV DQGHLGMSHQ HALAQVTAQA SDSHSQMQSQ AEFPSSLSSA SLIQPISAMN 60 MTSSQPMLFI TSGKNIHNTE SAFASHSDQR SQPAAIVADK PADDGYNWRK YGQKQVKGCE 120 YPRSYYKCTH PKCPVKKKVE RSLDGQVTEI IYRGQHNHER PIPNKRSKEG AAEVNGNTYP 180 DNSESLQQDD HLNFNRSSDG MVGLSKKERE GVSEQLSGSS DDEELEDEEA EDGEPEHKRR 240 NLETRVIESS SHRTVTEPRI ILQTTSEVDL LDDGYRWRKY GQKLVKGNPH PRSYYKCTST 300 GCNVRKHVER ASTDPKAVVT TYEGKHNHDV PAARNSSHNT SSSAAATASR SNYSSHDILP 360 SNQNGQGRSD QRNNVYRPVA VLQLKGEHEM T

Sequence ? help Back to Top

Protein Sequence Length: 391 aa Download sequence

MRRHLHGGLV DQGHLGMSHQ HALAQVTAQA SDSHSQMQSQ AEFPSSLSSA SLIQPISAMN  60
MTSSQPMLFI TSGKNIHNTE SAFASHSDQR SQPAAIVADK PADDGYNWRK YGQKQVKGCE  120
YPRSYYKCTH PKCPVKKKVE RSLDGQVTEI IYRGQHNHER PIPNKRSKEG AAEVNGNTYP  180
DNSESLQQDD HLNFNRSSDG MVGLSKKERE GVSEQLSGSS DDEELEDEEA EDGEPEHKRR  240
NLETRVIESS SHRTVTEPRI ILQTTSEVDL LDDGYRWRKY GQKLVKGNPH PRSYYKCTST  300
GCNVRKHVER ASTDPKAVVT TYEGKHNHDV PAARNSSHNT SSSAAATASR SNYSSHDILP  360
SNQNGQGRSD QRNNVYRPVA VLQLKGEHEM T

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03340.1	1e-108	WRKY family protein