PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020700193.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

G2-like

Protein Properties

Length: 819aa MW: 91238.3 Da PI: 7.0618

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020700193.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	37.4	5.5e-12	30	54	1	25
G2-like 1 kprlrWtpeLHerFveaveqLGGse 25 kprlrWt +LHerFv+av+qLGG+e XP_020700193.1 30 KPRLRWTADLHERFVDAVAQLGGPE 54 79*********************97 PP
2	Myb_DNA-binding	28	5.2e-09	32	53	1	22
TSSS-HHHHHHHHHHHHHTTTT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg 22 r+rWT++++e++vdav+qlGg+ XP_020700193.1 32 RLRWTADLHERFVDAVAQLGGP 53 89******************99 PP
3	G2-like	48.1	2.6e-15	274	304	25	55
G2-like 25 ekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +AtPkti+++m+vkgLtl h+kSHLQkYRl XP_020700193.1 274 TEATPKTIMRTMGVKGLTLFHLKSHLQKYRL 304 57****************************8 PP
4	Myb_DNA-binding	28.6	3.2e-09	277	303	23	48
-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 23 tWktIartmg.kgRtlkqcksrwqkyl 48 t+ktI+rtmg kg+tl ++ks++qky+ XP_020700193.1 277 TPKTIMRTMGvKGLTLFHLKSHLQKYR 303 8*************************7 PP
5	G2-like	104.5	6.5e-33	533	587	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 ++rlrWt+eLHerFv+av+qLGG+++AtPk +l++m+v gLt++hvkSHLQkYRl XP_020700193.1 533 RQRLRWTHELHERFVDAVTQLGGPDRATPKGVLRVMGVSGLTIYHVKSHLQKYRL 587 58****************************************************8 PP
6	Myb_DNA-binding	60.8	3e-19	535	586	1	48
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwqkyl 48 r+rWT e++e++vdav+qlGg+ t+k + r mg g+t +++ks++qky+ XP_020700193.1 535 RLRWTHELHERFVDAVTQLGGPdraTPKGVLRVMGvSGLTIYHVKSHLQKYR 586 89*************************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 819 aa Download sequence
MFPGLIHRQE ASIPQEAIHS PSVVLTADPK PRLRWTADLH ERFVDAVAQL GGPEINGSRR 60 TFPRILTDTR RILPGTSLGP SMPSPNELIR NFLFFAACRW IYTETKPTYE NKRKLVKAPL 120 DFIGMGIFEY GNVEVETHDA TDTKFSKFKD DIEYKPKYSK DEIQISSNGA HFILAIGMAT 180 SQAKMKVDIA MLQTVFPSCD STDQQNRDQV DFFKGSKVVD GKLENAMDEA FQGDENLIAM 240 KIAANSIESS KDVNEKICET REFMSKAEVE VFITEATPKT IMRTMGVKGL TLFHLKSHLQ 300 KYRLGKQSGK EMTEQPKDVP GSSSLSPRVA ASDINENQEV KEALRAQMEV QRRLHEQVEV 360 QLCWLSFVQK HIKIRMEAYQ NYIDSLLEKA CKIASEQIAS GGFNGQVCPP PSSLTKSVFQ 420 QLPLTESSPR FSHFWWPLTC LFVALLLVLR TPNLHCVFKE FVARSICEVR IPGFLGFGFS 480 AFAVDMYQPK HISSLNSVHN NGVAHDQIIE FTGNTMSPNG SANNSSNPNL SSRQRLRWTH 540 ELHERFVDAV TQLGGPDRAT PKGVLRVMGV SGLTIYHVKS HLQKYRLAKY IPDSSSDGLK 600 DESKEPGDLL SGMDSSSGVQ ITEALKLQME VQKRLHEQLE VQRQLQLRIE AQGKYLKKIM 660 EEQQRLNGVL AETPGMNLPP LPTSADFCLD SDPSTPAPIC ESLHKDKTSN GKHGKADSLV 720 KSTSFEDSSR REPLTPDSSF HTSESLKHER PSKRQRSNGS GVRGSGQVDL VLGNHILESS 780 SGSEFQQQCS MFNAGTHFDS SGTSFGDDDQ FGNGSGSDV

Sequence ? help Back to Top

Protein Sequence Length: 819 aa Download sequence

MFPGLIHRQE ASIPQEAIHS PSVVLTADPK PRLRWTADLH ERFVDAVAQL GGPEINGSRR  60
TFPRILTDTR RILPGTSLGP SMPSPNELIR NFLFFAACRW IYTETKPTYE NKRKLVKAPL  120
DFIGMGIFEY GNVEVETHDA TDTKFSKFKD DIEYKPKYSK DEIQISSNGA HFILAIGMAT  180
SQAKMKVDIA MLQTVFPSCD STDQQNRDQV DFFKGSKVVD GKLENAMDEA FQGDENLIAM  240
KIAANSIESS KDVNEKICET REFMSKAEVE VFITEATPKT IMRTMGVKGL TLFHLKSHLQ  300
KYRLGKQSGK EMTEQPKDVP GSSSLSPRVA ASDINENQEV KEALRAQMEV QRRLHEQVEV  360
QLCWLSFVQK HIKIRMEAYQ NYIDSLLEKA CKIASEQIAS GGFNGQVCPP PSSLTKSVFQ  420
QLPLTESSPR FSHFWWPLTC LFVALLLVLR TPNLHCVFKE FVARSICEVR IPGFLGFGFS  480
AFAVDMYQPK HISSLNSVHN NGVAHDQIIE FTGNTMSPNG SANNSSNPNL SSRQRLRWTH  540
ELHERFVDAV TQLGGPDRAT PKGVLRVMGV SGLTIYHVKS HLQKYRLAKY IPDSSSDGLK  600
DESKEPGDLL SGMDSSSGVQ ITEALKLQME VQKRLHEQLE VQRQLQLRIE AQGKYLKKIM  660
EEQQRLNGVL AETPGMNLPP LPTSADFCLD SDPSTPAPIC ESLHKDKTSN GKHGKADSLV  720
KSTSFEDSSR REPLTPDSSF HTSESLKHER PSKRQRSNGS GVRGSGQVDL VLGNHILESS  780
SGSEFQQQCS MFNAGTHFDS SGTSFGDDDQ FGNGSGSDV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	4e-72	G2-like family protein