PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020700232.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family C2H2
Protein Properties Length: 394aa    MW: 43675.3 Da    PI: 9.8819
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020700232.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.32.7e-05170193123
                     EEETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                     ++CpdCg+ F  +++L+ H  t H
  XP_020700232.1 170 FSCPDCGEIFMKSESLELHKTTrH 193
                     89*****************99988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    
MAGTRRTREK SNMKHSVQKE IIKEEENPTP RRVFTSFFTC RYHQVATAEG EGNKKKCKRI  60
GCSGSLCKLR ESSKIMLRPV TASPPESCKR RVSMSGGGSS RSMKAPLCEI NRVTSSSSSS  120
SLGATPSFSS LGGSLRGMHL RRLSGCYECR MAIDPINGVY RDSSLRATIF SCPDCGEIFM  180
KSESLELHKT TRHAVSELGP DDTSRNIVDI IFQSSWLKKQ APACKIDRIL KIHNSEKTIA  240
RFEDYRNSIK NKACKLAKKY PRCIADGNEL LRFHCTTFTC SLGLHGSTNL CDTIPKCRIC  300
SIIRDGIKAD ALGRIRTMAT SGRAHDLAQI SSENEKRGML VCRVIAGRVK RSQDSSEEFD  360
SVLGTSALYS SLDEIFVLNP KAILPCFVVI YRAS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.12e-91C2H2 family protein