PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020700314.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family ERF
Protein Properties Length: 180aa    MW: 19766.1 Da    PI: 7.2632
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020700314.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.21.1e-195199355
             AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    y+G+r+++ +g+W+AeIrdp++    +r++lg++ t+e+Aa+a++ a+++++g
  XP_020700314.1 51 YRGIRRRP-WGKWAAEIRDPRK---GARVWLGTYSTPEDAARAYDVAAREIRG 99
                    9*******.**********954...4*************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    
MCGGSIISDF IPFTSGQNLS RRHPENPKSA DSKDSDPAPS QEKKKVRKNI YRGIRRRPWG  60
KWAAEIRDPR KGARVWLGTY STPEDAARAY DVAAREIRGR KAKLNFPEEV PDVAGVDGGD  120
ASKKPRVAPE GWSASPASTE GLREQISSLE TFLGLEPEVV LTVETGGSGV DCFGMWDDDY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14358KKKVRKNIYRGIRRRP
24459KKKVRKNIYRGIRRRP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.12e-37ERF family protein