PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020700438.2
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family MYB
Protein Properties Length: 258aa    MW: 29639.8 Da    PI: 9.8735
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020700438.2genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.14.9e-194794148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd ll ++vk++G g+W++I + +g+ R++k+c++rw ++l
   XP_020700438.2 47 KGPWSAEEDALLMEYVKKHGEGNWNAIQKNIGLQRCGKSCRLRWANHL 94
                     79******************************************9996 PP
2Myb_DNA-binding48.61.8e-15100143146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g++T+eE+ l+++++++ G++ W+  a +++ gRt++++k++w++
   XP_020700438.2 100 KGSFTQEEENLIIKYHAEIGNK-WAQMATYLP-GRTDNEIKNFWNT 143
                      799*******************.*********.***********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    
MVHKDVPQPE VKIKYPVRVK EEPILGLSDS SSPGGGDDDD APQSLKKGPW SAEEDALLME  60
YVKKHGEGNW NAIQKNIGLQ RCGKSCRLRW ANHLRPNLIK GSFTQEEENL IIKYHAEIGN  120
KWAQMATYLP GRTDNEIKNF WNTRLKRRQR AGVPLYPPEI QAQIAMKKRQ RAFMLMQNQV  180
QRPINIGNAG NDETNYLLRN FDPSLPWQQR QASTFPFKTE HLSTKWYPNY ISDHQKVSPQ  240
PMSLAMGQAN NALIDVMF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.26e-67MYB family protein