PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020700451.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family LBD
Protein Properties Length: 191aa    MW: 20792.8 Da    PI: 6.8947
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020700451.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601345.9e-4231129199
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +CaaCk+lrr+C+++C lapyfp ++p kf ++h++FGasn++k+l++lpe++r da+ss+vyeA+ar+rdP+yG++g i klq+q+ +l+a+la
  XP_020700451.1  31 PCAACKILRRRCVDKCLLAPYFPPTDPLKFTVAHRVFGASNIIKFLQELPESHRADAVSSMVYEANARIRDPIYGCAGAICKLQKQVTELQAQLA 125
                     7********************************************************************************************** PP

          DUF260  96 llke 99 
                     ++++
  XP_020700451.1 126 RTRA 129
                     9987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    
MNLADTITTT SSTSSSSPPL LSLSPPIILS PCAACKILRR RCVDKCLLAP YFPPTDPLKF  60
TVAHRVFGAS NIIKFLQELP ESHRADAVSS MVYEANARIR DPIYGCAGAI CKLQKQVTEL  120
QAQLARTRAD LLHVQTQHAN FLALLMASSS MQSPPINIQS PLDSPNFLYD GDSDNNGALA  180
YGSVWEDSLW A
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.11e-62LBD family protein