PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020700458.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

AP2

Protein Properties

Length: 482aa MW: 53271.2 Da PI: 6.9568

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020700458.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	53.5	6e-17	159	208	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g XP_020700458.1 159 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 208 78*****************......55**********************997 PP
2	AP2	40.9	5.1e-13	251	301	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ g +k+++lg ++++ eAa+a+++a+ k +g XP_020700458.1 251 SKYRGVTLHK-CGRWEAR---M---GqllGKKYIYLGLYDSEVEAARAYDKAAIKCNG 301 89******.7**...5...334336******99********99776 PP

Sequence ? help Back to Top
Protein Sequence Length: 482 aa Download sequence
MVLDLNVASG CESSSVPEKL LPEGSVGVQM TDSGTSNSSV LNAEDLSNIG DEDSCSNRPA 60 FRFSILKDAD EVEEYGDEIR VASEADLITH QLFPPQAQTI LDGPRTGTTF ASSSSRPHLI 120 DLSFYQTDAS ATGEVKLLNP QQQQPQVKKS RRGPRSRSSQ YRGVTFYRRT GRWESHIWDC 180 GKQVYLGGFD TAHAAARAYD RAAIKFRGVD ADINFNLSDY DDDLRQMRNL TKEEFVHILR 240 RQSTGFSRGS SKYRGVTLHK CGRWEARMGQ LLGKKYIYLG LYDSEVEAAR AYDKAAIKCN 300 GREAVTNFEP STYEGELLSK DDVEAFGKDI DLNLSISQPS VSNLKRNVNP MGLQFQCGPY 360 EASNVKKMKV DQPSSNSALQ TQHLAVAPEH PRAWSNVYTG FIPINEENAL NKKAEPGSTS 420 WPWKFHSLSH LPLFSSAASS GFSASNTITN PSIQPPQSAS ASHLYHPHLH HPPAASHGFF 480 QG

Sequence ? help Back to Top

Protein Sequence Length: 482 aa Download sequence

MVLDLNVASG CESSSVPEKL LPEGSVGVQM TDSGTSNSSV LNAEDLSNIG DEDSCSNRPA  60
FRFSILKDAD EVEEYGDEIR VASEADLITH QLFPPQAQTI LDGPRTGTTF ASSSSRPHLI  120
DLSFYQTDAS ATGEVKLLNP QQQQPQVKKS RRGPRSRSSQ YRGVTFYRRT GRWESHIWDC  180
GKQVYLGGFD TAHAAARAYD RAAIKFRGVD ADINFNLSDY DDDLRQMRNL TKEEFVHILR  240
RQSTGFSRGS SKYRGVTLHK CGRWEARMGQ LLGKKYIYLG LYDSEVEAAR AYDKAAIKCN  300
GREAVTNFEP STYEGELLSK DDVEAFGKDI DLNLSISQPS VSNLKRNVNP MGLQFQCGPY  360
EASNVKKMKV DQPSSNSALQ TQHLAVAPEH PRAWSNVYTG FIPINEENAL NKKAEPGSTS  420
WPWKFHSLSH LPLFSSAASS GFSASNTITN PSIQPPQSAS ASHLYHPHLH HPPAASHGFF  480
QG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28550.3	1e-100	AP2 family protein