PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020700508.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family bHLH
Protein Properties Length: 193aa    MW: 21447 Da    PI: 8.7593
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020700508.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.31e-11250455
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                    +h  +Er+RR+++N+ +  Lr+l P     + k+ + a+i   A+e+Ik++q
  XP_020700508.1  2 SHITVERNRRRQMNEHLKVLRSLTPCF---YIKRGDQASIIGGAIEFIKEMQ 50
                    7999**********************9...9*******************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    
MSHITVERNR RRQMNEHLKV LRSLTPCFYI KRGDQASIIG GAIEFIKEMQ QLLHSLETKK  60
KRKSLSPSPS PSSRPSVLQL TSPPPLASCS PFEAVKELSA CCNSSVADVE AKISGSNVIL  120
KTLSKSIPGQ VVRIISLLER EAFEILHLSI SSMEDTVLYS FVIKIGLQCK LSVEELAFEV  180
QQSFSQELLA LTF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06120.12e-73bHLH family protein