PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020700529.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

MIKC_MADS

Protein Properties

Length: 245aa MW: 28357.5 Da PI: 10.0217

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020700529.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	99.7	1.1e-31	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtfskRr g+lKKA+E+SvLCdaevavi+fs++gklye+s+ XP_020700529.1 9 KRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVAVIVFSNKGKLYEFST 59 79***********************************************96 PP
2	K-box	103.4	2.9e-34	83	172	9	98
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 +e++ ++ ++ e+ kLk+++e+Lq++qRhl+Ge+L+sLs+keLq+LeqqLe+s+k+iRs+K++l+l++i+elqkkek l e+nk+L+k++ XP_020700529.1 83 NEANPQADWHLEYHKLKARVESLQKSQRHLMGEQLDSLSIKELQHLEQQLESSMKHIRSRKTQLILDSISELQKKEKILLEQNKTLEKEI 172 56667789*******************************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence
MGRGRVQLKR IENKINRQVT FSKRRSGLLK KAHEISVLCD AEVAVIVFSN KGKLYEFSTD 60 SSMEKILERY ERYSYAERAL FSNEANPQAD WHLEYHKLKA RVESLQKSQR HLMGEQLDSL 120 SIKELQHLEQ QLESSMKHIR SRKTQLILDS ISELQKKEKI LLEQNKTLEK EIIAKEKAKA 180 LTQIAPWEKQ NLSQYSSAPL HVISDSVPTP TRTFQARANE EESPQPQLRV GNTLLPPWML 240 SHING

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69120.1	2e-83	MIKC_MADS family protein