PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020700672.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

MYB

Protein Properties

Length: 255aa MW: 28180.7 Da PI: 7.1773

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020700672.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.4	1.2e-16	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd l +v+++G+g +W + +++ g++R++k+c++rw++yl XP_020700672.1 14 RGPWSPEEDAALRSYVERHGTGgNWISLPQKAGLKRCGKSCRLRWLNYL 62 89*********************************************97 PP
2	Myb_DNA-binding	43.4	8.1e-14	69	111	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +T+eEd+++ + k G++ W+ Ia+++ gRt++++k++w++ XP_020700672.1 69 GGFTEEEDKIIFSLYKTIGSR-WSVIASHLH-GRTDNDVKNYWNT 111 569****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence
MGRAPCCDKA NVKRGPWSPE EDAALRSYVE RHGTGGNWIS LPQKAGLKRC GKSCRLRWLN 60 YLRPDIKHGG FTEEEDKIIF SLYKTIGSRW SVIASHLHGR TDNDVKNYWN TKLMKKIMAA 120 GETINSPVAN SQITNKIHHP SPSTLATSPP DQFPVMKAEA FLPPATLDSN FPYSSEPYPL 180 PQLPPEFAAT GYSFSPPADD LSVSFSASSS SITMDDSEGV YFNQAAAFFP EHGFSSWTEL 240 LGGFMTSGVY QNLYS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36890.1	4e-74	MYB family protein