PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020700712.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

G2-like

Protein Properties

Length: 465aa MW: 51513.3 Da PI: 6.1573

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020700712.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	110.9	6.3e-35	237	291	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +pr+rWtpeLHerFv+av+qLGGsekAtPk +l+lmkv+gLt++hvkSHLQkYR+ XP_020700712.1 237 RPRMRWTPELHERFVDAVNQLGGSEKATPKGVLKLMKVDGLTIYHVKSHLQKYRT 291 59****************************************************8 PP
2	Myb_DNA-binding	59.1	1e-18	239	290	1	48
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwqkyl 48 r+rWT+e++e++vdav+qlGg t+k + + m g+t +++ks++qky+ XP_020700712.1 239 RMRWTPELHERFVDAVNQLGGSekaTPKGVLKLMKvDGLTIYHVKSHLQKYR 290 89****************99***************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 465 aa Download sequence
MEAHSAMSAS LSDMKQICSS GVSGVISSSL PTHPSLFAER LLPHSRQVSM DRELRNNSFP 60 QHHTPFVSNN GVVGPLFSSA SGFSSDLHYS SSAPQVRYSN GAPYISQSPS CGIPIPLAQM 120 CSGAFQSSTC NFPSNATGMS WVPGSIHDIL SYPDNLNMEN NQIQSSPINN QIQTTNITAS 180 DDLTKQNEWW DLSSDDWKDL LNDPVGTETQ QKQVPLHSGE LCIVNSPSSS MSGAPPRPRM 240 RWTPELHERF VDAVNQLGGS EKATPKGVLK LMKVDGLTIY HVKSHLQKYR TARYRPDSFE 300 GSSEKRGYPL DETASLDLKT GRELTEALRL QMEVQKRLHE QLEIQRNLQL RIEEQGRYLQ 360 MIFEQQYKVG LDKLRPPFDR DEQTTQSCGT TPSPPKSESF EKNRAEKANE PSTTKATEEK 420 QGAEDNKQTV PDTGLTSTVE HIGSIGSESP SHKCVESNAK VFITE

Sequence ? help Back to Top

Protein Sequence Length: 465 aa Download sequence

MEAHSAMSAS LSDMKQICSS GVSGVISSSL PTHPSLFAER LLPHSRQVSM DRELRNNSFP  60
QHHTPFVSNN GVVGPLFSSA SGFSSDLHYS SSAPQVRYSN GAPYISQSPS CGIPIPLAQM  120
CSGAFQSSTC NFPSNATGMS WVPGSIHDIL SYPDNLNMEN NQIQSSPINN QIQTTNITAS  180
DDLTKQNEWW DLSSDDWKDL LNDPVGTETQ QKQVPLHSGE LCIVNSPSSS MSGAPPRPRM  240
RWTPELHERF VDAVNQLGGS EKATPKGVLK LMKVDGLTIY HVKSHLQKYR TARYRPDSFE  300
GSSEKRGYPL DETASLDLKT GRELTEALRL QMEVQKRLHE QLEIQRNLQL RIEEQGRYLQ  360
MIFEQQYKVG LDKLRPPFDR DEQTTQSCGT TPSPPKSESF EKNRAEKANE PSTTKATEEK  420
QGAEDNKQTV PDTGLTSTVE HIGSIGSESP SHKCVESNAK VFITE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28610.1	1e-67	G2-like family protein