PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020700958.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

ARF

Protein Properties

Length: 699aa MW: 77634.6 Da PI: 7.1372

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020700958.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	74.2	1.5e-23	139	240	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 f+k+lt sd++++g +++p++ ae++ ++++ s++l+ +d++ +W++++iyr++++r++lt+GW+ F + ++L +gD v+F + +++ XP_020700958.1 139 FCKTLTASDTSTHGGFSVPRRAAEDCfppldHKQQRPSQELVAKDLHDVEWKFRHIYRGQPRRHLLTTGWSTFIHKKKLVAGDAVLFL--RGDDG 231 99**************************955566778*********************************************..34899 PP ..EEEEE-S CS B3 91 elvvkvfrk 99 el+++++r+ XP_020700958.1 232 ELRLGIRRA 240 99**997 PP
2	Auxin_resp	112.4	4.4e-37	268	346	4	82
Auxin_resp 4 aastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 +st+s+F+v YnPr+ +seF+v+++k+ k+++ ++svG+Rfkm+fe+ed++err+sG+++gv dldp+rWp+SkWr+ XP_020700958.1 268 TVSTGSIFQVKYNPRVNQSEFIVPYWKFTKSCDYSFSVGTRFKMRFESEDAAERRFSGLITGVGDLDPIRWPGSKWRCF 346 689**************************************************************************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 699 aa Download sequence
MGIDLNTVDQ EQNDESAEHS AADAGSVCLE LWYACAGPLI SLPRKGSVVV YLPQGHLEVL 60 GKGGNGMMMR CDVPPHVFCR VVDVQLRAEA VTDVVYAQLS LVAESKEAMK QFQNGKADKE 120 GEELDEMNSG DKSPTPHMFC KTLTASDTST HGGFSVPRRA AEDCFPPLDH KQQRPSQELV 180 AKDLHDVEWK FRHIYRGQPR RHLLTTGWST FIHKKKLVAG DAVLFLRGDD GELRLGIRRA 240 SQLKGNLFHQ TPASLNLEIG TLSSLKSTVS TGSIFQVKYN PRVNQSEFIV PYWKFTKSCD 300 YSFSVGTRFK MRFESEDAAE RRFSGLITGV GDLDPIRWPG SKWRCFVVRW DGADVDGGRP 360 NRVSPWEIEP TGSLSGSNNL YLPCSKRIRI GISSMNAGYT YPSGGGYSDL EETARFKKVL 420 QGQEIFNNKT RDVGDATLSH TLETSNHHFP EMRRCFANPE SSLLVRSGSN NRVPVGNSDF 480 FYQCRDFEEL VRFPKVLQGQ EIVPVRPTYP GIGVECLRET KSKVLESSYA GTCYAPLHGY 540 RTTMLPCAAS AQASPSSVLM FQQATSQLPF SHSYYGINEH EKAEDCDMSG TLSSVDSSSQ 600 SHQPGNCISR DHCESDLNFT KTFEKNDPIL PCGGNGFMLF GFPLIAKIPV ENAISGLLKN 660 PSLLEGKHEL SFSNRRPQLA KESASWLFKS ARVNLQEFA

Sequence ? help Back to Top

Protein Sequence Length: 699 aa Download sequence

MGIDLNTVDQ EQNDESAEHS AADAGSVCLE LWYACAGPLI SLPRKGSVVV YLPQGHLEVL  60
GKGGNGMMMR CDVPPHVFCR VVDVQLRAEA VTDVVYAQLS LVAESKEAMK QFQNGKADKE  120
GEELDEMNSG DKSPTPHMFC KTLTASDTST HGGFSVPRRA AEDCFPPLDH KQQRPSQELV  180
AKDLHDVEWK FRHIYRGQPR RHLLTTGWST FIHKKKLVAG DAVLFLRGDD GELRLGIRRA  240
SQLKGNLFHQ TPASLNLEIG TLSSLKSTVS TGSIFQVKYN PRVNQSEFIV PYWKFTKSCD  300
YSFSVGTRFK MRFESEDAAE RRFSGLITGV GDLDPIRWPG SKWRCFVVRW DGADVDGGRP  360
NRVSPWEIEP TGSLSGSNNL YLPCSKRIRI GISSMNAGYT YPSGGGYSDL EETARFKKVL  420
QGQEIFNNKT RDVGDATLSH TLETSNHHFP EMRRCFANPE SSLLVRSGSN NRVPVGNSDF  480
FYQCRDFEEL VRFPKVLQGQ EIVPVRPTYP GIGVECLRET KSKVLESSYA GTCYAPLHGY  540
RTTMLPCAAS AQASPSSVLM FQQATSQLPF SHSYYGINEH EKAEDCDMSG TLSSVDSSSQ  600
SHQPGNCISR DHCESDLNFT KTFEKNDPIL PCGGNGFMLF GFPLIAKIPV ENAISGLLKN  660
PSLLEGKHEL SFSNRRPQLA KESASWLFKS ARVNLQEFA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33860.1	1e-167	ARF family protein