PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020701018.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

LBD

Protein Properties

Length: 170aa MW: 18841.6 Da PI: 6.4862

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020701018.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	143.1	8.4e-45	6	105	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +Ca+Ck+lrr+CakdC++ap fp+++p+kfa+vhk+FGasnv+k+l++lp ++r da+sslvyeA+ar+rdPvyG+vg i++lq+q++ql+ +la XP_020701018.1 6 PCASCKLLRRRCAKDCIFAPFFPSDEPQKFAIVHKVFGASNVSKMLQDLPFQQRADAVSSLVYEANARIRDPVYGCVGAISQLQNQVKQLQMQLA 100 7********************************************************************************************** PP DUF260 96 llkee 100 ++++e XP_020701018.1 101 MAHAE 105 99987 PP

Sequence ? help Back to Top
Protein Sequence Length: 170 aa Download sequence
MGGTPPCASC KLLRRRCAKD CIFAPFFPSD EPQKFAIVHK VFGASNVSKM LQDLPFQQRA 60 DAVSSLVYEA NARIRDPVYG CVGAISQLQN QVKQLQMQLA MAHAEILCFQ MQNDSSSLVN 120 PQLGVDDDSD DNKSFLLNNN MIMASIPQSM NFSSSSSVFP ESLKRESLWI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	4e-59	LBD family protein