PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020701080.2
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family B3
Protein Properties Length: 258aa    MW: 28391.7 Da    PI: 6.549
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020701080.2genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3536.3e-1769164294
                     EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS.-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
              B3   2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesg.rsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                     +k+l +sdv+++gr+vlpkk +e++   +  +e++ l + d++  r+W++k+++  ++ks++y+l+ ++ eFv+++gL +gDf++++ d+ ++ +
  XP_020701080.2  69 QKELRNSDVGSLGRVVLPKKETEANlpILTVREGISLPMIDLDTaRVWNFKFRFwpNNKSRMYILE-NTGEFVRSHGLISGDFIMLYKDN-EKDR 161
                     7999**********************9555678899*****7766*******99777888888888.********************433.6655 PP

                     .EE CS
              B3  92 lvv 94 
                     +v+
  XP_020701080.2 162 YVI 164
                     665 PP
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    
MAGIQSGAAS PDLLTEACFA VRRRKGTSTG HRRAAAAAAA GFSSPPILPR SVTTPPEPLA  60
MNGLRFLLQK ELRNSDVGSL GRVVLPKKET EANLPILTVR EGISLPMIDL DTARVWNFKF  120
RFWPNNKSRM YILENTGEFV RSHGLISGDF IMLYKDNEKD RYVIRAKKAG MQEPVLASLP  180
GIEDGIFDSI VTDIVVARAR YSDLYLPLGD GMNMAFGLNC AFSADLLMTV PDEKLENYSA  240
ESTPKLGSME NLTLDDLY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26790.18e-46B3 family protein