PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020701159.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

TCP

Protein Properties

Length: 292aa MW: 30264.5 Da PI: 10.1625

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020701159.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	115.9	5.2e-36	63	157	7	96
TCP 7 rhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg......kaaksa 94 r++++hTkv+gR+RR+R++a caar+F+L++eLG+++d+ ti WLlq a+pai+++tgt++ +a ++ + + ++ s+ +aa ++ XP_020701159.1 63 RTKDRHTKVEGRGRRIRMPAACAARIFQLTRELGHKSDGDTIRWLLQHAEPAIIAATGTGTVPAIATnV--NGTLKIPTQASNpapslsSAADAT 155 89*********************************************************9999954431..222222211122223321222222 PP TCP 95 ak 96 +k XP_020701159.1 156 KK 157 21 PP

Sequence ? help Back to Top
Protein Sequence Length: 292 aa Download sequence
MDFQAKSKED ADAWIGEAGE NGSAGQIAAL SAVSPNRNRL IMPKPEPIET IGALPIIPRA 60 LGRTKDRHTK VEGRGRRIRM PAACAARIFQ LTRELGHKSD GDTIRWLLQH AEPAIIAATG 120 TGTVPAIATN VNGTLKIPTQ ASNPAPSLSS AADATKKRRK LQPTRATAGG GVIGYFQGPD 180 PLLPPGGAIS ISASLAPVAA PRMVPMWTVG GSAAAISPGA VWMFPSSAAP SSQGHIWTFP 240 MGSQVVNFAA ARPVFSAAGA ASGKQELQLM KESAADVEQS GEEPDETVKE AA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	156	160	KKRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45680.1	2e-48	TCP family protein