PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020701161.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family Trihelix
Protein Properties Length: 251aa    MW: 28225.8 Da    PI: 10.676
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020701161.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix64.13e-2041125187
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                     +W++ e+laLi+a+r+++ +l+rg+l++ +W++v++ +     ++  + ++++qC++k+e+l+kry+ +k+++ +       ++ yf++++a
  XP_020701161.1  41 CWSHGETLALIDAYRDKWFSLGRGNLRASHWDDVAATVarecpSSSAVPKTSVQCRHKIEKLRKRYRSEKQRSLS-------SWLYFRKMDA 125
                     7*************************************99999999**********************9998875.......4999999985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    
MASASPSYSS AAAGADASPF PFAALPPPPP SLSSRRLPPP CWSHGETLAL IDAYRDKWFS  60
LGRGNLRASH WDDVAATVAR ECPSSSAVPK TSVQCRHKIE KLRKRYRSEK QRSLSSWLYF  120
RKMDAMERGA AAETEGAGGL RFTIPKAVRS KIVGCRPSPR AAIKPGLEEM RRRIEEKRLR  180
MRMRSVEGGI GDLVAALGVF GEGFLRMEQM KMDVSREMEK MRMEMELKRT EMILDCQRKI  240
VETMVQRFMG N
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44730.13e-33Trihelix family protein