PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020701180.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

LBD

Protein Properties

Length: 245aa MW: 25759.1 Da PI: 8.1537

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020701180.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	125.7	2.2e-39	27	127	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C aCk+lrrkC+++C++apyf ++q +++fa+vhk+FGasnv+kll ++p ++r da+ ++++eA+ r+rdPvyG+v++i++lqqq+ +l+ael XP_020701180.1 27 PCGACKFLRRKCVSGCIFAPYFDSDQgAAQFAAVHKVFGASNVSKLLLHIPAHKRLDAVVTICFEAQSRLRDPVYGCVAHIFALQQQVVSLQAEL 121 7*********************9989***************************************************************** PP DUF260 95 allkee 100 ++l+++ XP_020701180.1 122 SYLQAH 127 *99986 PP

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence
MSTGSTSSSG GAGGSGGGSG VGGGGGPCGA CKFLRRKCVS GCIFAPYFDS DQGAAQFAAV 60 HKVFGASNVS KLLLHIPAHK RLDAVVTICF EAQSRLRDPV YGCVAHIFAL QQQVVSLQAE 120 LSYLQAHLAT LELPTPPPLP PPTLPQSQAF SMPELLSSSN LPSHSSLDLS WLFDPQLQMQ 180 HPQQQNRPVE LRQPQQLARV AGRQVAESSG SSQGGGGDLQ ALARELIERH RSSSSSDSPL 240 LPKQP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45420.1	5e-60	LBD family protein