PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020701469.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family NF-YA
Protein Properties Length: 252aa    MW: 27874.6 Da    PI: 10.0279
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020701469.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA102.15.2e-3285140258
       CBFB_NFYA   2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                      p+YVNaKQy++I++RR++Rak+e ++kl +k rkpylheSRh+hA+rRpRg+gGrF
  XP_020701469.1  85 VPVYVNAKQYNGIVRRRKARAKAEMKSKL-TKIRKPYLHESRHQHAMRRPRGCGGRF 140
                     59***************************.**************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    
MDVVILPSSR LFRDSGKGQK NQPHSTTISL QSPPDFQGRF ELGLGQSVVC SNYPYIDQCY  60
GLFATYGAQA MHGRMLLPLN MTADVPVYVN AKQYNGIVRR RKARAKAEMK SKLTKIRKPY  120
LHESRHQHAM RRPRGCGGRF LNTKKDANVQ TENKPGNPNN GMRPTRLATS PSSEILQSDS  180
GNPNSASCGS SISRSEVTSM YSQGENDHFH LIEHLRPSLY HPLSSMIVGD HSSVIPSKWG  240
TAADGCCDLL KV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06510.26e-39NF-YA family protein