PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020701538.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family ERF
Protein Properties Length: 160aa    MW: 17799.2 Da    PI: 10.3469
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020701538.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.46.5e-173281255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    +++GVr +k +g+WvAeIr+p   +kr r++lg++ t+  Aa+a++ a   l+g
  XP_020701538.1 32 QFRGVRMRK-WGKWVAEIREP---NKRSRIWLGSYSTPVAAARAYDTAVYLLRG 81
                    79*****99.**********9...336*********************998887 PP
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    
MKPEMGRKEV GRTPLVPSPP TPPSAGGRRE KQFRGVRMRK WGKWVAEIRE PNKRSRIWLG  60
SYSTPVAAAR AYDTAVYLLR GRSARLNFPE EIEVEEVTND FNSGITAASI RKKASEVGAR  120
VDALQTGVIP PPPPPPPPPS RSWKYPDLNL EPSPETSDEE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67190.15e-44ERF family protein