PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020701551.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family MYB
Protein Properties Length: 316aa    MW: 35293.4 Da    PI: 5.5578
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020701551.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding551.9e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg W++eEde+l+++++ +G g+W+ ++ + g+ R++k+c++rw +yl
   XP_020701551.1 14 RGLWSPEEDEKLIKYITTHGYGCWSEVPDKAGLQRCGKSCRLRWINYL 61
                     788*******************************************97 PP
2Myb_DNA-binding54.52.8e-1767111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rgr+++eE++l++ +++  G++ W+ Ia++++ gRt++++k++w+++
   XP_020701551.1  67 RGRFSPEEEKLIISLHAVVGNR-WAHIASHLP-GRTDNEIKNYWNSW 111
                      89********************.*********.************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    
MGHHSCCNQQ KVKRGLWSPE EDEKLIKYIT THGYGCWSEV PDKAGLQRCG KSCRLRWINY  60
LRPDIRRGRF SPEEEKLIIS LHAVVGNRWA HIASHLPGRT DNEIKNYWNS WIKKKIRKPN  120
TGTSTSSIRQ NSNIQIPPTF TQDFNSLAQF EPLANQVMTN SNPNDNSSIF PSSPIPLFMF  180
ESECGATMGK DDHELVADVG NLNLVDIWST NGNQNDHQAL SPLCSFVDHN YLPPLVDGMV  240
TMGPPPGCIG EDCAASGSHE CFEKNELSEW VEAQQYPGFF IWDQGLQGQI GGEDLPVSSP  300
PKSNTDTSVD TFPSSL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63910.13e-85MYB family protein