PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020701829.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family ERF
Protein Properties Length: 384aa    MW: 42198.4 Da    PI: 4.4672
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020701829.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.28.6e-1866114355
             AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     y+GVr++  +g+Wv+eIr+p   + r  r +lg+f ta eAa a+++a+++++g
  XP_020701829.1  66 YRGVRQRT-WGKWVSEIREP---N-RgNRLWLGTFPTALEAAIAYDQAARAMYG 114
                     9****999.**********8...2.359***********************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    
MAEPERKRRR RRDGPDSLAE TLKKWRELNK DFDSSDSERT RKAPAKGSRK GCMRGKGGPE  60
NSNFSYRGVR QRTWGKWVSE IREPNRGNRL WLGTFPTALE AAIAYDQAAR AMYGAGARVN  120
FPSDQIGSPD ESRITASKLL YGLTATTANC SNVSVDLIAA NCSIVSEDLI ERRSKEAASD  180
CTPAEPSHVG SSAMTEEIGD MTNAESFDWQ DISLENFDVD EMLRMMDADP GNTGISAEPE  240
TVAGLTEETD TDAGGRCTSR TPSAADKLGS LGQMENETND ICFIYELIKQ LNYWPAGDPA  300
SFSLGFNDGA EMNAGRHCSS PCHVGMQGTS SHMENETDDT GFIYDFLRQS RQEPDYWPAG  360
DQELFSMGFN DGGRLMNSAS DCIN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1610RKRRR
2612RKRRRRR
3613RKRRRRRD
4712KRRRRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40350.13e-42ERF family protein