PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020701896.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family MYB_related
Protein Properties Length: 293aa    MW: 31252.2 Da    PI: 9.2766
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020701896.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.29.2e-14141185347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ l++ + +++G+g+W++I+r +   Rt+ q+ s+ qky
   XP_020701896.1 141 PWTEEEHRLFLLGLEKFGKGDWRSISRNFVVSRTPTQVASHAQKY 185
                      7*******************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    
MSLPASAGVV EAARWSREDE KAFENALATV PYPTNDEGAA PATAAEDRWL EAVGARVPGK  60
TMVEVKKHYG LLVEDVNAID GGRVPIPRYA DDSSSSPRSG EQAGKKHSGF SDRKAGTGGF  120
DSGGQCKGGS KSDLERKKGI PWTEEEHRLF LLGLEKFGKG DWRSISRNFV VSRTPTQVAS  180
HAQKYFIRLN SINRDRRRSS IHDITNVNGG DAPTSQGPIT GQGIVNSAPA VGSFINQPPQ  240
PNIPAMGIYG TPMGHPVPGH MVSAAVGTPV MIPPGHAPYV MPVAYPIPPT MHQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.11e-56MYB family protein