PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020701938.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

FAR1

Protein Properties

Length: 725aa MW: 83249.2 Da PI: 7.2332

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020701938.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	44.3	2.4e-14	39	75	1	35
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C Cgt++ Tp++Rrgp+g++tLCnaCG+ + k ++ XP_020701938.1 39 CLRCGTSSkaTPHMRRGPEGPRTLCNACGIAWTKGKM 75 788******************************9875 PP
2	FAR1	86.2	5.1e-27	108	193	1	88
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 +fYn+YA +GFsvrks+s ks++n + +rtfvCs+eg+r+++k + ++ +r+r+etr+gC a++++k + +g+++vt++ eHnH+ XP_020701938.1 108 EFYNKYAGFIGFSVRKSSSDKSSENI-TRSRTFVCSREGFRKDKKGA-KEVKRPRPETRIGCPARMTIKITPTGNYRVTEFIAEHNHQ 193 6*******************6666.999*********9999.999**********************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 725 aa Download sequence
MHLPVTSGDM DYGENAHRQE QDPEVQNDGD DGMEGPLRCL RCGTSSKATP HMRRGPEGPR 60 TLCNACGIAW TKGKMRKVIE SDIHREDGTA QMVPEIDMEF ESEDKAYEFY NKYAGFIGFS 120 VRKSSSDKSS ENITRSRTFV CSREGFRKDK KGAKEVKRPR PETRIGCPAR MTIKITPTGN 180 YRVTEFIAEH NHQPAPPSST HLLRSQRITM EVQAADAELS DDSGATPRSA NESMGRQVGG 240 FCNVNFLPSD YKNYLSSKRM KAMQMGDAGS VLKYLQNMQL NSQSFFYAIQ VDEDDKLTNI 300 FWADERSVVD FNCFGDVVCF DTTFKINGYG RPFTPFLGVN HHKQTIIFGA ALLYDESTES 360 FKWLFETFKI AMRGKQPKTI LTDLSITLSS AIAAVWPGTN HRLCEWHVYQ NAAKHLNQVF 420 QGSKTFAKDF SRCVYDYEEE EDFLLAWRTM LEKYDLQNNE WLCKLFEDRE KWALAYNRHI 480 FCADIKSTLR NESLSSVLKK YLSPQLDLLS FFKHYERVVE EHRYSELQAD FHASQSFPRI 540 PPSKMLRQAA NLYTPVVFEI FRREFEMFMD CMLFSCGEVD TISDYKVAVT EKPKEHYVRF 600 DSSDCSVACN CKKFEFMGIQ CCHALKVLDF RNIKELPLKY FLKRWTKEAK MGKKKDGQLA 660 TNESEPKSPT STSMHAPMAL YGQHQGFHGL NHFNQDSPAS DLHHPFHTNS HLGQEFSAQQ 720 PQFTL

Sequence ? help Back to Top

Protein Sequence Length: 725 aa Download sequence

MHLPVTSGDM DYGENAHRQE QDPEVQNDGD DGMEGPLRCL RCGTSSKATP HMRRGPEGPR  60
TLCNACGIAW TKGKMRKVIE SDIHREDGTA QMVPEIDMEF ESEDKAYEFY NKYAGFIGFS  120
VRKSSSDKSS ENITRSRTFV CSREGFRKDK KGAKEVKRPR PETRIGCPAR MTIKITPTGN  180
YRVTEFIAEH NHQPAPPSST HLLRSQRITM EVQAADAELS DDSGATPRSA NESMGRQVGG  240
FCNVNFLPSD YKNYLSSKRM KAMQMGDAGS VLKYLQNMQL NSQSFFYAIQ VDEDDKLTNI  300
FWADERSVVD FNCFGDVVCF DTTFKINGYG RPFTPFLGVN HHKQTIIFGA ALLYDESTES  360
FKWLFETFKI AMRGKQPKTI LTDLSITLSS AIAAVWPGTN HRLCEWHVYQ NAAKHLNQVF  420
QGSKTFAKDF SRCVYDYEEE EDFLLAWRTM LEKYDLQNNE WLCKLFEDRE KWALAYNRHI  480
FCADIKSTLR NESLSSVLKK YLSPQLDLLS FFKHYERVVE EHRYSELQAD FHASQSFPRI  540
PPSKMLRQAA NLYTPVVFEI FRREFEMFMD CMLFSCGEVD TISDYKVAVT EKPKEHYVRF  600
DSSDCSVACN CKKFEFMGIQ CCHALKVLDF RNIKELPLKY FLKRWTKEAK MGKKKDGQLA  660
TNESEPKSPT STSMHAPMAL YGQHQGFHGL NHFNQDSPAS DLHHPFHTNS HLGQEFSAQQ  720
PQFTL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	157	161	KRPRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-129	FAR1 family protein